| Basic Information | |
|---|---|
| Species | Citrus clementina |
| Cazyme ID | Ciclev10032073m |
| Family | PL1 |
| Protein Properties | Length: 332 Molecular Weight: 37306.4 Isoelectric Point: 7.6796 |
| Chromosome | Chromosome/Scaffold: 4 Start: 3290273 End: 3293928 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| PL1 | 61 | 240 | 0 |
| IVFEVSGTIHLSSYLSVSSYKTIDGRGQRIKLTGKGLRLKECEHVIICNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSR CYFTQHDKTMLIGADPSHVGDRCIRVTIHHCLFDGTRQRHPRLRFGKVHLYNNYTRNWGIYAVCASVESQIYSQCNIYEA | |||
| Full Sequence |
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| Protein Sequence Length: 332 Download |
| MVTLPYAQVD SCLRALAGQA EGFGRFAIGG LHGLVYFVTN LSDDGPGSLR EGCRRKEPLW 60 IVFEVSGTIH LSSYLSVSSY KTIDGRGQRI KLTGKGLRLK ECEHVIICNL EFEGGRGHDV 120 DGIQIKPNSR HIWIDRCSLR DYDDGLIDIT RQSTDITVSR CYFTQHDKTM LIGADPSHVG 180 DRCIRVTIHH CLFDGTRQRH PRLRFGKVHL YNNYTRNWGI YAVCASVESQ IYSQCNIYEA 240 GQKKRTFEYY TEKAADKLEA KSGLIRSEGD IFLKGAQAQL LTGVGEECVF HPSEYYPTWT 300 MEAPSDSLKQ ILQICTGWQS IPRPADVMIA N* |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam00544 | Pec_lyase_C | 7.0e-40 | 56 | 236 | 201 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| COG3866 | PelB | 2.0e-47 | 29 | 306 | 298 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| smart00656 | Amb_all | 5.0e-70 | 75 | 241 | 179 | + Amb_all domain. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CAB75748.1 | 0 | 1 | 326 | 1 | 336 | pectate lyase-like protein [Arabidopsis thaliana] |
| RefSeq | NP_191074.2 | 0 | 1 | 326 | 1 | 326 | pectate lyase family protein [Arabidopsis thaliana] |
| RefSeq | XP_002276049.1 | 0 | 1 | 330 | 1 | 330 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002311134.1 | 0 | 1 | 325 | 1 | 325 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002526780.1 | 0 | 1 | 312 | 1 | 312 | Pectate lyase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 2e-40 | 9 | 296 | 4 | 327 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 2e-40 | 9 | 296 | 4 | 327 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 3zsc_A | 2e-27 | 28 | 238 | 22 | 246 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 1vbl_A | 6e-26 | 77 | 238 | 130 | 330 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
| PDB | 3vmw_A | 1e-19 | 82 | 246 | 82 | 257 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| DY275282 | 334 | 1 | 332 | 0 |
| DY277275 | 310 | 4 | 313 | 0 |
| FC895817 | 292 | 4 | 295 | 0 |
| FC884660 | 313 | 1 | 313 | 0 |
| DY277275 | 28 | 305 | 332 | 0.0000001 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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