| Basic Information | |
|---|---|
| Species | Citrus clementina |
| Cazyme ID | Ciclev10032390m |
| Family | GT30 |
| Protein Properties | Length: 273 Molecular Weight: 30859.3 Isoelectric Point: 9.952 |
| Chromosome | Chromosome/Scaffold: 4 Start: 25646917 End: 25649041 |
| Description | KDO transferase A |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| GT30 | 46 | 225 | 0 |
| RWPERLGRPSVSRPPGPLIWFHAVSLGEGMAAIPVIKHCRRLRPDLHILMTTTTYSAFEVIKNRLPSGVIYQFCPLDIPVAVDAFLGYWKPSAIVIIEGE LWPNLIMGASKHGIALGLLNARVSTKSFKQWSGPLFRPLISLLLSKFSLIAPLSTLQAIRFQLLEASPFTINFSGDLKYV | |||
| Full Sequence |
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| Protein Sequence Length: 273 Download |
| MVMVMVMPMG AAIVYKLYRA LTYGVSPLVY LHLRWRKIRG REHPLRWPER LGRPSVSRPP 60 GPLIWFHAVS LGEGMAAIPV IKHCRRLRPD LHILMTTTTY SAFEVIKNRL PSGVIYQFCP 120 LDIPVAVDAF LGYWKPSAIV IIEGELWPNL IMGASKHGIA LGLLNARVST KSFKQWSGPL 180 FRPLISLLLS KFSLIAPLST LQAIRFQLLE ASPFTINFSG DLKYVHEYDE SEGDIGSIED 240 LKASLAHRQV WMASSIHRGE EKGHFMQDYF YI* |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam04413 | Glycos_transf_N | 3.0e-55 | 43 | 224 | 186 | + 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase). Members of this family transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Members of the family transfer UDP, ADP, GDP or CMP linked sugars. The Glycos_transf_N region is flanked at the N-terminus by a signal peptide and at the C-terminus by Glycos_transf_1 (pfam00534). The eukaryotic glycogen synthases may be distant members of this bacterial family. | ||
| COG1519 | KdtA | 5.0e-56 | 17 | 261 | 251 | + 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane] | ||
| PRK05749 | PRK05749 | 2.0e-63 | 17 | 262 | 257 | + 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0005529 | Interacting selectively and non-covalently with any carbohydrate, which includes monosaccharides, oligosaccharides and polysaccharides as well as substances derived from monosaccharides by reduction of the carbonyl group (alditols), by oxidation of one or more hydroxy groups to afford the corresponding aldehydes, ketones, or carboxylic acids, or by replacement of one or more hydroxy group(s) by a hydrogen atom. Cyclitols are generally not regarded as carbohydrates." [CHEBI:16646, GOC:mah] |
| GO:0005975 | carbohydrate metabolic process |
| GO:0016740 | transferase activity |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CBI30224.1 | 0 | 13 | 262 | 8 | 258 | unnamed protein product [Vitis vinifera] |
| RefSeq | NP_195997.2 | 0 | 7 | 262 | 1 | 256 | 3-deoxy-D-manno-octulosonic acid transferase-related [Arabidopsis thaliana] |
| RefSeq | XP_002277784.1 | 0 | 13 | 262 | 8 | 258 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002322900.1 | 0 | 13 | 262 | 10 | 259 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002528642.1 | 0 | 13 | 262 | 12 | 261 | 3-deoxy-d-manno-octulosonic-acid transferase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
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| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2xcu_D | 0.00000008 | 53 | 260 | 33 | 208 | A Chain A, The Structure Of A Protein In Glycosyl Transferase Family 8 From Anaerococcus Prevotii. |
| PDB | 2xcu_C | 0.00000008 | 53 | 260 | 33 | 208 | A Chain A, The Structure Of A Protein In Glycosyl Transferase Family 8 From Anaerococcus Prevotii. |
| PDB | 2xcu_B | 0.00000008 | 53 | 260 | 33 | 208 | A Chain A, The Structure Of A Protein In Glycosyl Transferase Family 8 From Anaerococcus Prevotii. |
| PDB | 2xcu_A | 0.00000008 | 53 | 260 | 33 | 208 | A Chain A, The Structure Of A Protein In Glycosyl Transferase Family 8 From Anaerococcus Prevotii. |
| PDB | 2xci_D | 0.00000008 | 53 | 260 | 33 | 208 | A Chain A, Membrane-Embedded Monofunctional Glycosyltransferase Waaa Of Aquifex Aeolicus, Substrate-Free Form |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| FC902977 | 253 | 10 | 262 | 0 |
| FC897826 | 255 | 10 | 264 | 0 |
| FC897629 | 253 | 10 | 262 | 0 |
| FC905948 | 253 | 10 | 262 | 0 |
| DY269671 | 253 | 10 | 262 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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