Basic Information | |
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Species | Citrus clementina |
Cazyme ID | Ciclev10033386m |
Family | GH28 |
Protein Properties | Length: 419 Molecular Weight: 45857.8 Isoelectric Point: 8.0359 |
Chromosome | Chromosome/Scaffold: 4 Start: 25493771 End: 25496117 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 73 | 406 | 0 |
EEACSSENEAVLVVPNNKIYHLKPITFSGPCKSDLTMKIYGTIKASVRLSDYSRDPRHWLVFENVNNFRVEGGGTIDGNGKVWWRKSCKVNKSLPCNDAP TAVTFYGCKNVRVSSLRFRNSQKMHLTFQYCVNVRALNLLVIAPGNSPNTDGIHVTGTQNILIKNCVIRTGDDCISIVSGSKNVRATDIICGPGHGISIG SLGAGNSEAFVSNVLVNRARLSGTTNGVRIKTWQGGSGFAKDILFQNVEMRNVTNPIIIDQHYCDQEKPCQEQASAVQVSNVVYQNIKGTSASEVAIKLD CSNQFPCRGLVLQDVILRLEEEDDIAKASCSNVR |
Full Sequence |
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Protein Sequence Length: 419 Download |
FSSYQGDRFV TTRDQYQRFG SPIGVDSESE TTLTRLYGRA SAPASPTKFV NVDDFEAKAD 60 GTDDSKAFME AWEEACSSEN EAVLVVPNNK IYHLKPITFS GPCKSDLTMK IYGTIKASVR 120 LSDYSRDPRH WLVFENVNNF RVEGGGTIDG NGKVWWRKSC KVNKSLPCND APTAVTFYGC 180 KNVRVSSLRF RNSQKMHLTF QYCVNVRALN LLVIAPGNSP NTDGIHVTGT QNILIKNCVI 240 RTGDDCISIV SGSKNVRATD IICGPGHGIS IGSLGAGNSE AFVSNVLVNR ARLSGTTNGV 300 RIKTWQGGSG FAKDILFQNV EMRNVTNPII IDQHYCDQEK PCQEQASAVQ VSNVVYQNIK 360 GTSASEVAIK LDCSNQFPCR GLVLQDVILR LEEEDDIAKA SCSNVRLSPP GNFLPRCI* 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03003 | PLN03003 | 1.0e-91 | 50 | 411 | 372 | + Probable polygalacturonase At3g15720 | ||
PLN02188 | PLN02188 | 7.0e-102 | 38 | 416 | 383 | + polygalacturonase/glycoside hydrolase family protein | ||
pfam00295 | Glyco_hydro_28 | 2.0e-124 | 76 | 410 | 335 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02793 | PLN02793 | 2.0e-148 | 28 | 402 | 379 | + Probable polygalacturonase | ||
PLN02218 | PLN02218 | 2.0e-150 | 15 | 417 | 406 | + polygalacturonase ADPG |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAC26512.1 | 0 | 29 | 417 | 67 | 458 | polygalacturonase precursor [Cucumis melo] |
GenBank | AAF71160.1 | 0 | 47 | 417 | 87 | 455 | AF152758_1 polygalacturonase A [Actinidia chinensis] |
Swiss-Prot | P35336 | 0 | 47 | 417 | 87 | 455 | PGLR_ACTDE RecName: Full=Polygalacturonase; Short=PG; AltName: Full=Pectinase; Flags: Precursor |
RefSeq | XP_002313308.1 | 0 | 42 | 417 | 1 | 375 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002517823.1 | 0 | 39 | 417 | 69 | 446 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 6e-23 | 139 | 339 | 110 | 318 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1nhc_F | 5e-18 | 145 | 362 | 77 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 5e-18 | 145 | 362 | 77 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 5e-18 | 145 | 362 | 77 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 5e-18 | 145 | 362 | 77 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
CX667359 | 237 | 4 | 240 | 0 |
CX666078 | 203 | 4 | 206 | 0 |
EX261408 | 259 | 48 | 306 | 0 |
EE093402 | 256 | 124 | 379 | 0 |
EX261408 | 36 | 303 | 338 | 0.0000003 |
Sequence Alignments (This image is cropped. Click for full image.) |
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