Basic Information | |
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Species | Citrus clementina |
Cazyme ID | Ciclev10033716m |
Family | GH28 |
Protein Properties | Length: 484 Molecular Weight: 53124.8 Isoelectric Point: 9.0565 |
Chromosome | Chromosome/Scaffold: 4 Start: 22430710 End: 22433428 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 104 | 448 | 0 |
KAACRVAGATVEIPSEFKFLIKPITLQGPCMPNLVLQIDGTLLAPPKVGSWPKSSLFQWINFKWLHNFTIQGNGIVDGQGFEWWGGSESNSIQLYVVTSH WQKKSKHIPEMKPTALRFYASYNVTVRDIKINNSPLCHLKFDSSGGIKVKNIHISSPENSPNTDGIHLQNTKDVEIQHSDIACGDDCVSIQTGCSNVHIH HINCGPGHGISLGGLGKDKSVACVSDIVVEKISLQNTLAGVRIKTWQGGIGSVKNVSFSSIQVSDVKVPIIIDQYYCDKHLCNNQTGAVAISGVEFNQII GTYSVQPIHLACSNSVPCSDVDLIDIQLKPSSKYQSFQQALCWNS |
Full Sequence |
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Protein Sequence Length: 484 Download |
MRRNDKSSLL FVLIFLLIVS VTFSIMSVEA RKHHTKKSKP RPHKHQKDKH GPEPDSRFPS 60 PAPAPLPHYG SYNRTKSSIF DVLSFGAKGD GVSDDTKALI AAWKAACRVA GATVEIPSEF 120 KFLIKPITLQ GPCMPNLVLQ IDGTLLAPPK VGSWPKSSLF QWINFKWLHN FTIQGNGIVD 180 GQGFEWWGGS ESNSIQLYVV TSHWQKKSKH IPEMKPTALR FYASYNVTVR DIKINNSPLC 240 HLKFDSSGGI KVKNIHISSP ENSPNTDGIH LQNTKDVEIQ HSDIACGDDC VSIQTGCSNV 300 HIHHINCGPG HGISLGGLGK DKSVACVSDI VVEKISLQNT LAGVRIKTWQ GGIGSVKNVS 360 FSSIQVSDVK VPIIIDQYYC DKHLCNNQTG AVAISGVEFN QIIGTYSVQP IHLACSNSVP 420 CSDVDLIDIQ LKPSSKYQSF QQALCWNSYG KSQAPLVPSS IDYCLRRDSG SVKRIARSRE 480 HMC* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam00295 | Glyco_hydro_28 | 1.0e-67 | 112 | 431 | 321 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN03010 | PLN03010 | 3.0e-68 | 79 | 431 | 360 | + polygalacturonase | ||
PLN02188 | PLN02188 | 7.0e-70 | 77 | 435 | 363 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02218 | PLN02218 | 4.0e-76 | 74 | 458 | 390 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 8.0e-91 | 66 | 478 | 419 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | NP_189293.1 | 0 | 29 | 483 | 29 | 468 | polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] |
RefSeq | XP_002266099.1 | 0 | 29 | 483 | 29 | 476 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002312682.1 | 0 | 31 | 483 | 31 | 466 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002315680.1 | 0 | 80 | 472 | 1 | 378 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002527898.1 | 0 | 1 | 483 | 1 | 477 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 8e-22 | 170 | 386 | 110 | 321 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1rmg_A | 6e-19 | 60 | 466 | 3 | 361 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
PDB | 2iq7_G | 8e-16 | 204 | 417 | 88 | 311 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 8e-16 | 204 | 417 | 88 | 311 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_E | 8e-16 | 204 | 417 | 88 | 311 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |