CAZyme Information

Basic Information
SpeciesChlamydomonas reinhardtii
Cazyme IDCre08.g373450.t1.1
FamilyGH13
Protein PropertiesLength: 733 Molecular Weight: 80241.6 Isoelectric Point: 6.3381
ChromosomeChromosome/Scaffold: 8 Start: 3200690 End: 3211538
DescriptionAlpha amylase family protein
View CDS
External Links
NCBI Taxonomy
CAZyDB
Signature Domain  Download full data set without filtering
FamilyStartEndEvalue
GH132705926e-30
  FTPEGTLAAAAERLEHVAAAGFTAVQLMPLAEYSDVWGYNPRLLMSLHGKYGSPEDMRRFVDRAHQLGLGVIIDVVLHHGAVDGNSLWEYDGWGPDYNGG
  IYHEGGHDTMWGRGFAFWKREVYDMVQAACVMWLGDYRCDGLRFDSANDLPRDTIQALTYHLHERFPGRILTAEVTPENPQSVHELGFDSVWVHSGYFDI
  IQQHRALGRGHHGGGDWAEGWNLPRLRTVMVLHYGFTHPTQCIKYLLGSHDQVGCHNGGAWYQDLQMIGGRKRYAVDQYGGGRGDWHARSCSRLWWAANV
  AAAGLPMCFMGTEFAQSGWWDNN
Full Sequence
Protein Sequence     Length: 733     Download
MSQTLKHGCG SSTIHRSRGR DVARVAIRGN APVASTSAGN NVPRALVSPA LSLARRGPAP    60
PAAAAAPAID ESSYAAPPLP QTFTHAPHLI ASAPSPHGRG AVVVPDGSGA VSVKVWAPHA    120
ASVSVLLGDS GAEVPLHREW DDWSAVLSPG SLSPQGGAYC FRLTTHDGHS FTRRDPYARA    180
TEYTSDWCYV DDPAAFQWSD RPAGSSSASS PAPPLPPVRH LGDLDLLGSA GSGLEEEEVE    240
LVGQGKQEQG GWRPRPFDEY IIYECCVGSF TPEGTLAAAA ERLEHVAAAG FTAVQLMPLA    300
EYSDVWGYNP RLLMSLHGKY GSPEDMRRFV DRAHQLGLGV IIDVVLHHGA VDGNSLWEYD    360
GWGPDYNGGI YHEGGHDTMW GRGFAFWKRE VYDMVQAACV MWLGDYRCDG LRFDSANDLP    420
RDTIQALTYH LHERFPGRIL TAEVTPENPQ SVHELGFDSV WVHSGYFDII QQHRALGRGH    480
HGGGDWAEGW NLPRLRTVMV LHYGFTHPTQ CIKYLLGSHD QVGCHNGGAW YQDLQMIGGR    540
KRYAVDQYGG GRGDWHARSC SRLWWAANVA AAGLPMCFMG TEFAQSGWWD NNSERGLNWE    600
HTQDEVGQHM LALFSTVNGL RTRFPALRRG WANILHEDRA NGVVAFERVI EGETRLVCVI    660
NAGRKHWGAG DYGVWVGHAE GRLEEVFNSQ SPLYGGNVEA PSGFSNEPRP IYDGKIWINL    720
PEQCTIIFQH ML* 
Functional Domains Download unfiltered results here
Cdd IDDomainE-ValueStartEndLengthDomain Description
cd11350AmyAc_42.0e-33252630419+
TIGR02402trehalose_TreZ1.0e-37114462368+
COG0296GlgB5.0e-49100696650+
cd11325AmyAc_GTHase2.0e-67175648515+
Annotations - NR Download unfiltered results here
SourceHit IDE-ValueQuery StartQuery EndHit StartHit EndDescription
GenBankAAU01394.10100729291859putative 1,4-alpha-glucan branching enzyme 2 [Toxoplasma gondii]
RefSeqXP_001694399.1012013203predicted protein [Chlamydomonas reinhardtii]
RefSeqXP_001694399.10275732221626predicted protein [Chlamydomonas reinhardtii]
RefSeqXP_002367056.101007293208881,4-alpha-glucan branching enzyme, putative [Toxoplasma gondii ME49]
RefSeqXP_627714.10109696455981,4-alpha-glucan branching enzyme; alpha-amylase; glycogen brancing enzyme [Cryptosporidium parvum Iowa II]
Annotations - PDB Download unfiltered results here
SourceHit IDE-ValueQuery StartQuery EndHit StartHit EndDescription
PDB2by3_A5e-28236523103403A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens
PDB2by2_A5e-28236523103403A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens
PDB2by1_A5e-28236523103403A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens
PDB2by0_A5e-28236523103403A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens
PDB2bxz_A5e-28236523103403A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens
Hydropathy
EST Download unfiltered results here
HitLengthStartEndEValue
FD8340002454897330
BU6498731822524330
FD9315742235117330
HO4154173632946560
GW5934952374937290
Orthologous Group
SpeciesID
Aquilegia coeruleaAquca_066_00053.1Aquca_027_00415.5Aquca_027_00415.4Aquca_027_00415.3Aquca_027_00415.2
Aquca_027_00415.1Aquca_015_00400.6Aquca_015_00400.5Aquca_015_00400.2Aquca_015_00400.1
Aquca_015_00400.3Aquca_015_00400.4
Arabidopsis lyrata873536321348908239
Arabidopsis thalianaAT3G20440.3AT3G20440.2AT2G36390.1AT5G03650.1
Brachypodium distachyonBradi1g41970.2Bradi1g41970.1Bradi1g29850.2Bradi1g29850.1Bradi5g09170.2
Bradi5g09170.1Bradi3g44760.1
Brassica rapaBra035782Bra005269Bra017241Bra009521
Carica papayaevm.model.supercontig_5.62
Capsella rubellaCarubv10012936mCarubv10022617mCarubv10000235m
Chlamydomonas reinhardtiiCre06.g270100.t1.3Cre10.g444700.t1.1Cre06.g289850.t1.3
Citrus clementinaCiclev10007401mCiclev10011063mCiclev10000406mCiclev10000374mCiclev10000272m
Ciclev10000256m
Citrus sinensisorange1.1g035501morange1.1g002609morange1.1g004765morange1.1g004253morange1.1g003474m
orange1.1g003390morange1.1g003230morange1.1g003226m
Cucumis sativusCucsa.378410.2Cucsa.378410.1Cucsa.077550.3Cucsa.077550.1Cucsa.077550.2
Eucalyptus grandisEucgr.F03487.1Eucgr.A01533.1Eucgr.F01770.1
Fragaria vescamrna30233.1-v1.0-hybridmrna08644.1-v1.0-hybridmrna08646.1-v1.0-hybrid
Glycine maxGlyma18g10385.1Glyma03g35020.2Glyma03g35020.1Glyma19g37750.2Glyma19g37750.1
Glyma04g01950.2
Gossypium raimondiiGorai.009G406400.4Gorai.011G196000.5Gorai.011G196000.4Gorai.011G196000.3Gorai.011G196000.2
Gorai.011G196000.12Gorai.011G196000.1Gorai.011G196000.7Gorai.011G196000.6Gorai.011G196000.13
Gorai.002G172100.7Gorai.002G172100.5Gorai.002G172100.3Gorai.002G172100.2Gorai.002G172100.1
Gorai.009G441800.2Gorai.009G441800.1Gorai.009G406400.6Gorai.009G406400.5Gorai.009G406400.3
Gorai.009G406400.2Gorai.009G406400.1Gorai.002G241400.7Gorai.002G241400.6Gorai.002G241400.5
Gorai.002G241400.4Gorai.002G241400.2Gorai.002G241400.1Gorai.005G113800.3Gorai.005G113800.2
Gorai.005G113800.1
Linum usitatissimumLus10000912Lus10023878Lus10014382Lus10016012Lus10012264
Malus domesticaMDP0000218396MDP0000148418MDP0000214735MDP0000177786
Manihot esculentacassava4.1_006199mcassava4.1_004366mcassava4.1_003773mcassava4.1_001701mcassava4.1_001686m
cassava4.1_002337mcassava4.1_002172mcassava4.1_002171mcassava4.1_001826mcassava4.1_001598m
cassava4.1_001595m
Medicago truncatulaMedtr7g104080.1
Mimulus guttatusmgv1a001162mmgv1a001301mmgv1a001932m
Oryza sativaLOC_Os02g32660.2LOC_Os06g26234.3LOC_Os06g26234.2LOC_Os06g26234.1LOC_Os02g32660.1
LOC_Os06g51084.8LOC_Os06g51084.7LOC_Os06g51084.6LOC_Os06g51084.5LOC_Os06g51084.4
LOC_Os06g51084.3LOC_Os06g51084.2LOC_Os06g51084.1
Panicum virgatumPavirv00035568mPavirv00058932mPavirv00002278mPavirv00067040mPavirv00061484m
Pavirv00061483mPavirv00061485m
Physcomitrella patensPp1s200_23V6.1Pp1s15_181V6.2Pp1s15_181V6.1Pp1s54_189V6.2Pp1s54_189V6.1
Pp1s64_78V6.1
Phaseolus vulgarisPhvul.006G047000.1Phvul.001G187600.1Phvul.009G011000.1
Picea abiesMA_10430611g0010
Populus trichocarpaPotri.006G115100.5Potri.001G359200.1Potri.006G115100.6Potri.006G115100.4Potri.006G115100.3
Potri.006G115100.2Potri.006G115100.1Potri.005G251000.5Potri.005G251000.4Potri.005G251000.3
Potri.005G251000.2Potri.005G251000.1Potri.005G251000.6
Prunus persicappa016544mppa001312mppa001929m
Ricinus communis29762.m00048630170.m01435927496.m000095
Setaria italicaSi008087mSi016350mSi009379mSi009312mSi005911m
Si006006mSi006081m
Selaginella moellendorffii165481437348437417
Sorghum bicolorSb03g027310.1Sb04g021540.1Sb06g015360.1Sb10g030776.1
Thellungiella halophilaThhalv10020019mThhalv10016249mThhalv10012785mThhalv10012784mThhalv10012679m
Vitis viniferaGSVIVT01037695001GSVIVT01033801001GSVIVT01008673001
Volvox carteriVocar20012173mVocar20015251mVocar20002436mVocar20007338m
Sequence Alignments  (This image is cropped. Click for full image.)
Phylogeny  (This image is cropped. Click for full image.)