| Basic Information | |
|---|---|
| Species | Chlamydomonas reinhardtii |
| Cazyme ID | Cre12.g492750.t1.3 |
| Family | CBM20 |
| Protein Properties | Length: 2500 Molecular Weight: 353378 Isoelectric Point: 4.7281 |
| Chromosome | Chromosome/Scaffold: 12 Start: 554257 End: 571608 |
| Description | Carbohydrate-binding-like fold |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| CBM20 | 499 | 578 | 6.7e-21 |
| VHFTVPQYVTVPGQHLVLVGSVPALGGWNPTSGVQLKWEPGHSWSAELLLGPGQDIEAKVVYYDNGRYSWEPGPNRSLKL | |||
| CBM20 | 218 | 305 | 7.2e-23 |
| LRFLVPSFATQPGQHLAVVGHCPELGFWDLSKALVLAWGEGHRWSGEVEVDYKGAQNTEFKVIMVDSRSNTVLWEPGTNRILKTQSDA | |||
| Full Sequence |
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| Protein Sequence Length: 2500 Download |
| MQPSASLCRA ECAAGAAPSA VPATSSLRVS HGAVRARAHQ QKCLGVLAGG PDSHGLRSAP 60 APAGKRRPTV CRAGGEGLLH EGPEAGKGLG GAGSACPTGA SGDARQVSAS AASPASVGAG 120 SAKAGTRPSG GPAGRPAQPP IVEVVLDAED AVAQPPTPSP AAGTTRAKAP GSSPASNAAA 180 AASSKASKSA AAKPGAKAPA TPAAAAAAPP PPRTRAKLRF LVPSFATQPG QHLAVVGHCP 240 ELGFWDLSKA LVLAWGEGHR WSGEVEVDYK GAQNTEFKVI MVDSRSNTVL WEPGTNRILK 300 TQSDAEAAGA GDLPQLLHCD WGNETSHQAP PAAAAAAAGA AALGEGVLRA RVQIVVPLYV 360 GGPGQRLVLV GSGPGLGNWD VSRGVQLSSS AGHIWRGEVE LPLGVMLEGK LVVVGPNGEQ 420 RWEAGPNRTL SLAVPPPEDI LPPPEDAPEG TKPTEVSGHY VVLAHWGITG CSQALYRPAV 480 DSDAAKGGPL SDGQVLSLVH FTVPQYVTVP GQHLVLVGSV PALGGWNPTS GVQLKWEPGH 540 SWSAELLLGP GQDIEAKVVY YDNGRYSWEP GPNRSLKLSE VLRDATPGSE PLFTCYWGHT 600 PTTPVVVVPK RHPRDLPADL ELVEGEVLDP VGGRQQQRPP PPRLQDVVFG EGRGPTPESD 660 AMLRFLVFMM STFITAKPPP GAAAGAAAAG AAAAASAAAA TAAAAASSSS DAVVDASVAA 720 AAYEAQLESM RQALRASKFR NTKLSWELSE TRRKYESRLE ELARTTRDSE VAAVLAAASS 780 ALSSGALSGA EVDVGSSVDD VAAAAAAAAS EMGPQALSAA VSALAGAVPA LELQQLRDML 840 KAHDEANVAF EARARQQANK GAAPSARARQ ELVAVEMALV EARDALRSRL KDIAAGSLGG 900 PAAAAVRYAA ATAAMEAAAV AASVAAAGAG VDGAVPPAVA AAAAALAAGA GGSAAASAAA 960 EVDSLKAQLK QLLSQRSQQM ESARQQNREA EERNAARISA LELELLQLQQ QSLAATITAA 1020 DASAAVEEAN AAADSMMASL RQALISAENG RAVAASAAET LRAAFDVREA ELQAQLESER 1080 GRFQMALEQA KAAGAAATAA AMEESTAQLR AEFYVREAEL VRSLEEARER YKAEAAAAAA 1140 EVAAREAEVA ARHSAELTRL REEREAALAA ARAEAEQQRA DGDTWAASLR AAAAAREEEV 1200 QAKLQAAQAR YDKLVAAAAA ERSAARAAAD KAAAELTSRL AASDAAAAEL GSALQEARGE 1260 VAKTRAELAQ ARSSGFTIAR NYEELAWQLS AALSEAANAN EFRALEGAAA SEAETALKAE 1320 IAALMSRASQ LEAQLAAATR QYEADLLAAE QVAVAAREAA LAAAQSQFEA ASSAMRAAHA 1380 EQVAAAEARL AEMEGALQAA EQKAKETEAA AAASLESTQQ VMLQQLEAAR SEAATRLEAA 1440 REEMDGRRRE LEAAVAAAAA ELADTKQQYE ARLLEQQTRL MEELAARRED LKSAAAAASR 1500 MRMERDALAA QRLADLRTEL EAAAAAREQA LQRRQQADMQ RAATAYAEVA AQLVDMQLSA 1560 AAAQEASQEE KEARMEEVRK ARAAYEEMAA RQQAIAEDQL RAELDALSAS HAAELSQLEA 1620 LHAEQLAERA AALEEVASVL GGEVEALRGE LASRQEMYTA LARDQADLAA SAAAAQKAVA 1680 ELEAQLAAAN GRHAAELEQL RTQQSALLSN DLASARMEVE QAAAATVAAV KAEQQAQVAA 1740 LTQQVQEARA ALAQQQEAAA AQQVALEAAA VKQRTVEELL AVAVADQAAA RADYERQLEA 1800 AAVELARTRQ QYETRLVEQQ MRILTEVAEK REALEAQAEA LAEEQLAGAL RLQEQLGEAL 1860 AAHRAQVTSL TLEHTRQVAA QEASFQAQLA DLATKLGEAQ HEAEEAATRQ QEAALAAAEA 1920 QRRLQEEAAA QLQQASAAAA TAALKYNQEL DAIKSSLQTQ VDDARALQSA AAAEAAAIRS 1980 QAEAAALEAA ADAMALQSVA TAAEAAAAAA AADAAASAAQ VQDLQQQLGA AQAAAAAQLA 2040 EAQARSEAAL AALKEAQARE LQALSAQLQS AQQAAAEAQK AAAEAAAREQ QALTDGSAKT 2100 EALAGEVDAV RAALTAQLTD AQSQQQAAEA EAAATKAQAQ QLQQALAAAQ AAAAADLAAA 2160 VARSQQEVAA LKEAQGLELQ ALTAQLVVAK KAADEAAARE KKVREEAAAK EAVLQSQLEA 2220 TRAEAGAARA ALAAQLAELQ VQKDAAAAGM EATKAQVIDL QGLLTAAQAA AQAVLGDAEK 2280 RGKQEAAALR EAHAKELQAL TAQLQASQQA AAEAQKAAAD GATREQALSG EVESARAALT 2340 SQIADTKAQQ AAAGAEVAAA RAQAEALQRR YEEEQAAAAA QLAEAQARSE AALAALKEAQ 2400 ARELQALSSE LAAARKEAEE TAAREKQALA DSEAKAAAAA KEAAALRAQV QAAEATAAAA 2460 AAEVATLKGV TEELKSLMAE AEKSFKSELT ATASRGEAAV |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| smart01065 | CBM_2 | 1.0e-15 | 219 | 301 | 85 | + Starch binding domain. | ||
| smart01065 | CBM_2 | 5.0e-16 | 351 | 430 | 83 | + Starch binding domain. | ||
| cd05467 | CBM20 | 8.0e-19 | 499 | 578 | 84 | + The family 20 carbohydrate-binding module (CBM20), also known as the starch-binding domain, is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch. | ||
| smart01065 | CBM_2 | 3.0e-19 | 499 | 580 | 86 | + Starch binding domain. | ||
| cd05467 | CBM20 | 3.0e-19 | 227 | 303 | 78 | + The family 20 carbohydrate-binding module (CBM20), also known as the starch-binding domain, is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| DDBJ | BAB64297.1 | 0.00000003 | 1231 | 2935 | 12437 | 14201 | I-connectin [Procambarus clarkii] |
| DDBJ | BAB64297.1 | 0.0004 | 1981 | 2941 | 12032 | 13017 | I-connectin [Procambarus clarkii] |
| RefSeq | XP_001694683.1 | 0.0000000004 | 218 | 486 | 63 | 342 | predicted protein [Chlamydomonas reinhardtii] |
| RefSeq | XP_001694683.1 | 9e-18 | 352 | 612 | 63 | 337 | predicted protein [Chlamydomonas reinhardtii] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1cyg_A | 0.0001 | 215 | 304 | 579 | 669 | A Chain A, Cyclodextrin Glucanotransferase (E.C.2.4.1.19) (Cgtase) |
| PDB | 1kum_A | 0.0002 | 364 | 432 | 20 | 92 | A Chain A, Cyclodextrin Glucanotransferase (E.C.2.4.1.19) (Cgtase) |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| EX942060 | 228 | 364 | 578 | 2e-18 |
| EX938390 | 228 | 364 | 578 | 3e-18 |
| EX942060 | 217 | 230 | 431 | 3e-17 |
| EX938390 | 217 | 230 | 431 | 3e-17 |
| EX938390 | 78 | 230 | 305 | 0.011 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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