Basic Information | |
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Species | Cucumis sativus |
Cazyme ID | Cucsa.005440.1 |
Family | PL1 |
Protein Properties | Length: 418 Molecular Weight: 46727 Isoelectric Point: 9.0674 |
Chromosome | Chromosome/Scaffold: 00055 Start: 535310 End: 536849 |
Description | Pectate lyase family protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 135 | 333 | 0 |
IIFGRSMVIRLSQELMISSHKTIDARGANVHIAFGAGLTIQFVNNVIIHNLHIHDIVSKSGGMIRDSVDHYGFRTQSDGDGISIFGSSHVWIDHVSMSNC QDGLIDAIMGSTAITISNCHFTHHNEVMLFGASDSYAEDEIMQVTLAFNHFGRGLVQRMPRCRWGFFHVVNNDYTHWLMYAIGGSQHPTIVSQGNRFIA |
Full Sequence |
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Protein Sequence Length: 418 Download |
NANVDEDEYW QTRATEAKKV AQGAFNANPE IVTDTLNAAV SRTMLGHNST RRSLRKKYRG 60 PCLATNPIDR CWRCDRNWAK NRRKLAECPL GFGHQTIGGK RGPIYVVTDA SDDDLVNPKP 120 GTLRHGVIQK GPLWIIFGRS MVIRLSQELM ISSHKTIDAR GANVHIAFGA GLTIQFVNNV 180 IIHNLHIHDI VSKSGGMIRD SVDHYGFRTQ SDGDGISIFG SSHVWIDHVS MSNCQDGLID 240 AIMGSTAITI SNCHFTHHNE VMLFGASDSY AEDEIMQVTL AFNHFGRGLV QRMPRCRWGF 300 FHVVNNDYTH WLMYAIGGSQ HPTIVSQGNR FIAPPNPNAK QITKREYAME DEWKHWSWRS 360 EGDELMNGAV FIASGDQTKG KKKGLSRYDM ISFKPGTYVR RLVRLSGTIE CTPGKPC* 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam04431 | Pec_lyase_N | 4.0e-11 | 7 | 54 | 49 | + Pectate lyase, N terminus. This region is found N terminal to the pectate lyase domain (pfam00544) in some plant pectate lyase enzymes. | ||
COG3866 | PelB | 6.0e-28 | 96 | 331 | 253 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 6.0e-62 | 147 | 331 | 207 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 7.0e-74 | 141 | 335 | 206 | + Amb_all domain. |
Gene Ontology | |
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GO Term | Description |
GO:0030570 | pectate lyase activity |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAN79927.1 | 0 | 7 | 417 | 32 | 439 | hypothetical protein [Vitis vinifera] |
EMBL | CBI22159.1 | 0 | 7 | 417 | 61 | 468 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002311599.1 | 0 | 7 | 417 | 20 | 429 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002330086.1 | 0 | 7 | 417 | 30 | 435 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002520133.1 | 0 | 2 | 417 | 26 | 440 | Pectate lyase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 66 | 375 | 2 | 313 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 66 | 375 | 2 | 313 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 2e-22 | 85 | 322 | 2 | 227 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1vbl_A | 4e-16 | 149 | 331 | 128 | 330 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
PDB | 1pcl_A | 0.00000000000001 | 131 | 331 | 54 | 276 | A Chain A, Unusual Structural Features In The Parallel Beta-Helix In Pectate Lyases |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
HO778688 | 406 | 13 | 418 | 0 |
CO103662 | 282 | 94 | 375 | 0 |
FG606120 | 344 | 28 | 371 | 0 |
CO117395 | 267 | 50 | 316 | 0 |
CK262438 | 299 | 77 | 375 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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