y
Basic Information | |
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Species | Cucumis sativus |
Cazyme ID | Cucsa.011030.1 |
Family | PL1 |
Protein Properties | Length: 367 Molecular Weight: 40592.5 Isoelectric Point: 8.4846 |
Chromosome | Chromosome/Scaffold: 00154 Start: 363314 End: 364506 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 79 | 285 | 0 |
VIQNEPLWIIFKRDMVIKLAQELVMNSFKTIDGRGASVHLAGGPCIKIHYATNIIIHGIHIHDCKRGGNANIRDSPQHAGWWTASDGDGVSILGGKQIWI DHCSLSNCNDGLIDAIHGSTAITISNNYMTHHDKVMLLGHSDSFTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSASPTIYS QGNRFVA |
Full Sequence |
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Protein Sequence Length: 367 Download |
SINGSRRNLG YLSCGTGNPI DDCWRCDSNW ETNRKRLADC AIGFGKNAIG GKNGRFYVVT 60 DSGNDDPLNP RPGTLRHAVI QNEPLWIIFK RDMVIKLAQE LVMNSFKTID GRGASVHLAG 120 GPCIKIHYAT NIIIHGIHIH DCKRGGNANI RDSPQHAGWW TASDGDGVSI LGGKQIWIDH 180 CSLSNCNDGL IDAIHGSTAI TISNNYMTHH DKVMLLGHSD SFTQDKNMQV TIAFNHFGEG 240 LVQRMPRCRH GYFHVVNNDY THWEMYAIGG SASPTIYSQG NRFVAPYNRF RKEVTKHEDA 300 PESEWRHWNW RSEGDLLLNG AYFRQSGAGA SSSYARAYSL SARPSSLVGD ITITAGALNC 360 RRGSRC* 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3866 | PelB | 5.0e-29 | 105 | 283 | 191 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 2.0e-72 | 98 | 283 | 209 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 5.0e-77 | 92 | 286 | 206 | + Amb_all domain. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAF63756.1 | 0 | 1 | 366 | 33 | 398 | AF243475_1 pectate lyase [Vitis vinifera] |
RefSeq | XP_002268976.1 | 0 | 1 | 366 | 38 | 403 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002300069.1 | 0 | 1 | 366 | 38 | 403 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002322215.1 | 0 | 1 | 366 | 38 | 403 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002526952.1 | 0 | 1 | 366 | 40 | 396 | Pectate lyase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 18 | 327 | 2 | 313 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 18 | 327 | 2 | 313 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 2e-18 | 87 | 284 | 50 | 247 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1bn8_A | 8e-16 | 108 | 286 | 151 | 349 | A Chain A, Bacillus Subtilis Pectate Lyase |
PDB | 2bsp_A | 0.000000000000002 | 108 | 286 | 151 | 349 | A Chain A, Bacillus Subtilis Pectate Lyase R279k Mutant |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
FG606120 | 323 | 1 | 323 | 0 |
HO778688 | 362 | 6 | 367 | 0 |
DY272271 | 309 | 1 | 309 | 0 |
DY278910 | 316 | 1 | 316 | 0 |
JG581707 | 288 | 2 | 289 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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