Basic Information | |
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Species | Cucumis sativus |
Cazyme ID | Cucsa.012240.1 |
Family | CBM43 |
Protein Properties | Length: 482 Molecular Weight: 52538.6 Isoelectric Point: 8.5844 |
Chromosome | Chromosome/Scaffold: 00154 Start: 1700561 End: 1703861 |
Description | O-Glycosyl hydrolases family 17 protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM43 | 343 | 420 | 2.9e-22 |
WCVMSPQASLSDPNLPNSVAYACDHADCTSLSYGSSCGNLDAKSNVSYAFNAYFQTMNQSSNACKFSNLATISTIDPS | |||
GH17 | 7 | 323 | 0 |
CNWGTRSSHPLPPDIVVKLMKDNGFNKVKLFEADPGALQALGNSGLQVMLGIPNEFLAPLASSVRVAENWVAKNVSYFISNFGTNIRYVAVGNEPFLNAY NGSFLQSTFPALQNIQAALIKAGLGRQVKVTIPLNADVYETSNGLPSGGNFRPDIRDLMVNIIKFLSNNACPLTINIYPFLSLNADPHFPKEYAFFSGNA APVIDGSISYTNVLDANFDTLVSALEKNGFTSMPLIIGEVGWPTDGDPSANKANAQRFNQGLIERINRRQGTPKRPVPTDTYIFAIVDEDAKSIQPGNFE RHWGVFNYDGTIKYSLN |
Full Sequence |
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Protein Sequence Length: 482 Download |
SGFGFACNWG TRSSHPLPPD IVVKLMKDNG FNKVKLFEAD PGALQALGNS GLQVMLGIPN 60 EFLAPLASSV RVAENWVAKN VSYFISNFGT NIRYVAVGNE PFLNAYNGSF LQSTFPALQN 120 IQAALIKAGL GRQVKVTIPL NADVYETSNG LPSGGNFRPD IRDLMVNIIK FLSNNACPLT 180 INIYPFLSLN ADPHFPKEYA FFSGNAAPVI DGSISYTNVL DANFDTLVSA LEKNGFTSMP 240 LIIGEVGWPT DGDPSANKAN AQRFNQGLIE RINRRQGTPK RPVPTDTYIF AIVDEDAKSI 300 QPGNFERHWG VFNYDGTIKY SLNMGNGKQL VPAKGVQYLS KQWCVMSPQA SLSDPNLPNS 360 VAYACDHADC TSLSYGSSCG NLDAKSNVSY AFNAYFQTMN QSSNACKFSN LATISTIDPS 420 PPNQGNNRDA CQFGIMIDTT KKRHLARPPR TSSGTKLRIG QNSCWYWISF LLVPSILIMK 480 N* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG5309 | COG5309 | 3.0e-6 | 237 | 315 | 83 | + Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism] | ||
pfam07983 | X8 | 2.0e-14 | 342 | 413 | 79 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
smart00768 | X8 | 1.0e-23 | 342 | 420 | 81 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
pfam00332 | Glyco_hydro_17 | 2.0e-72 | 8 | 323 | 318 | + Glycosyl hydrolases family 17. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI27737.1 | 0 | 1 | 454 | 21 | 465 | unnamed protein product [Vitis vinifera] |
RefSeq | NP_197587.1 | 0 | 4 | 460 | 29 | 488 | glycosyl hydrolase family 17 protein [Arabidopsis thaliana] |
RefSeq | XP_002277217.1 | 0 | 6 | 454 | 18 | 457 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002309443.1 | 0 | 4 | 435 | 1 | 425 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002516181.1 | 0 | 4 | 443 | 41 | 473 | Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1ghr_A | 0 | 22 | 312 | 18 | 294 | A Chain A, Crystal Structure Of The Nasturtium Seedling Xyloglucanase Isoform Nxg1 |
PDB | 1aq0_B | 0 | 22 | 312 | 18 | 294 | A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group |
PDB | 1aq0_A | 0 | 22 | 312 | 18 | 294 | A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group |
PDB | 3f55_D | 0 | 17 | 324 | 13 | 315 | A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group |
PDB | 3f55_C | 0 | 17 | 324 | 13 | 315 | A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
HO797198 | 437 | 4 | 439 | 0 |
DT763058 | 284 | 97 | 376 | 0 |
AM721378 | 299 | 93 | 390 | 0 |
FY453511 | 287 | 38 | 324 | 0 |
DT549821 | 254 | 3 | 256 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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