| Basic Information | |
|---|---|
| Species | Cucumis sativus |
| Cazyme ID | Cucsa.027780.1 |
| Family | GH28 |
| Protein Properties | Length: 377 Molecular Weight: 39888.1 Isoelectric Point: 8.4282 |
| Chromosome | Chromosome/Scaffold: 00378 Start: 617807 End: 619211 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 33 | 364 | 0 |
| WTNACASTKKATIYVPRGRYCLQNVTFSGPCKNKAIIFRIDGSMEAPSDYLVIGNSAAWVVFRHVDGMTILGGSLDGKGAALWACKNSSYNALCPTGATT LEFSNSKNVVVNNLKSLNSQMFHVAINGCENVMVKGLRVSASSNSPNTDGIHVQSSSNVTIINSKIGTGDDCISVGPGVSNLQIQNISCGPGHGISIGSL GKDVKEIGVQNVTIKNVVFSRTENGVRIKTWGKPSNGFATDIVFQHIVMNNVHNPIVIDQNYCPTHKGCPGQASGIKISNVTYQDIQGTSTTKVAIMFDC SPTNPCIGIKLENVSLTYKNQTAEARCNNARG | |||
| Full Sequence |
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| Protein Sequence Length: 377 Download |
| WSTFVDASSY NVVDFGGKGD GTTDSTQAFQ TAWTNACAST KKATIYVPRG RYCLQNVTFS 60 GPCKNKAIIF RIDGSMEAPS DYLVIGNSAA WVVFRHVDGM TILGGSLDGK GAALWACKNS 120 SYNALCPTGA TTLEFSNSKN VVVNNLKSLN SQMFHVAING CENVMVKGLR VSASSNSPNT 180 DGIHVQSSSN VTIINSKIGT GDDCISVGPG VSNLQIQNIS CGPGHGISIG SLGKDVKEIG 240 VQNVTIKNVV FSRTENGVRI KTWGKPSNGF ATDIVFQHIV MNNVHNPIVI DQNYCPTHKG 300 CPGQASGIKI SNVTYQDIQG TSTTKVAIMF DCSPTNPCIG IKLENVSLTY KNQTAEARCN 360 NARGIVVGQV QPTACL* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam00295 | Glyco_hydro_28 | 7.0e-80 | 37 | 362 | 327 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02218 | PLN02218 | 8.0e-87 | 8 | 372 | 371 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 5.0e-99 | 12 | 376 | 372 | + Probable polygalacturonase | ||
| PLN02188 | PLN02188 | 2.0e-104 | 10 | 375 | 370 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN02155 | PLN02155 | 5.0e-127 | 3 | 376 | 380 | + polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABC72324.1 | 0 | 9 | 376 | 27 | 393 | endo-polygalacturonase [Prunus persica] |
| EMBL | CAH18935.1 | 0 | 3 | 376 | 25 | 398 | polygalacturonase [Pyrus communis] |
| RefSeq | XP_002309716.1 | 0 | 2 | 376 | 19 | 391 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002309718.1 | 0 | 3 | 376 | 21 | 392 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002529090.1 | 0 | 2 | 376 | 21 | 393 | Polygalacturonase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 4e-23 | 105 | 349 | 117 | 362 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1rmg_A | 5e-18 | 11 | 364 | 22 | 355 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
| PDB | 1hg8_A | 0.000000000000008 | 100 | 360 | 71 | 341 | A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus Fusarium Moniliforme |
| PDB | 1nhc_F | 0.0000000000001 | 104 | 329 | 77 | 302 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 0.0000000000001 | 104 | 329 | 77 | 302 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| DY281549 | 317 | 9 | 325 | 0 |
| JZ191937 | 301 | 76 | 376 | 0 |
| DY287541 | 299 | 9 | 307 | 0 |
| FC899369 | 297 | 9 | 305 | 0 |
| JZ194028 | 291 | 69 | 359 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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