| Basic Information | |
|---|---|
| Species | Cucumis sativus |
| Cazyme ID | Cucsa.033910.1 |
| Family | GH28 |
| Protein Properties | Length: 393 Molecular Weight: 42185.3 Isoelectric Point: 9.4561 |
| Chromosome | Chromosome/Scaffold: 00438 Start: 470516 End: 472261 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 52 | 380 | 0 |
| ASACTSPKPSTIYVPKGRFLIKGIVFKGPCKNQITFQIDGTVVAPSDYRALGNSDSWILFSKVNKVSVVGGTLDGKGASYWACKTSGKNCPVGVPSMTFN WANNIVISGLTSINSRQTHLVINGCNNVVVRNVKAIAPDQSPNTDGIHVQTSKGVTIIGCTLQTGDDCVSIGPGTYNLFMTNLKCGPGHGVSIGSLGKEL KEDGVQNISLKNSVFSGSDNGIRIKSWARPSKGFVRNIVFDNIVMDNVENPIVIDQNYCPDNKGCPRQNSGIRISKVTYRNIRGTSATPEAVSFDCSITN PCTDIKLQDIKLLYKNKAASSSCRNVRGS | |||
| Full Sequence |
|---|
| Protein Sequence Length: 393 Download |
| MANFPFFSIH FCLLLITLFF QASSAGNYNV ISFGAKGDER TDSTVSFLKA WASACTSPKP 60 STIYVPKGRF LIKGIVFKGP CKNQITFQID GTVVAPSDYR ALGNSDSWIL FSKVNKVSVV 120 GGTLDGKGAS YWACKTSGKN CPVGVPSMTF NWANNIVISG LTSINSRQTH LVINGCNNVV 180 VRNVKAIAPD QSPNTDGIHV QTSKGVTIIG CTLQTGDDCV SIGPGTYNLF MTNLKCGPGH 240 GVSIGSLGKE LKEDGVQNIS LKNSVFSGSD NGIRIKSWAR PSKGFVRNIV FDNIVMDNVE 300 NPIVIDQNYC PDNKGCPRQN SGIRISKVTY RNIRGTSATP EAVSFDCSIT NPCTDIKLQD 360 IKLLYKNKAA SSSCRNVRGS STGILMPRSC ML* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam00295 | Glyco_hydro_28 | 4.0e-88 | 55 | 377 | 325 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02218 | PLN02218 | 3.0e-88 | 29 | 388 | 367 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 1.0e-97 | 30 | 391 | 371 | + Probable polygalacturonase | ||
| PLN02188 | PLN02188 | 1.0e-102 | 23 | 390 | 375 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN02155 | PLN02155 | 6.0e-168 | 7 | 391 | 387 | + polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| RefSeq | XP_002309713.1 | 0 | 7 | 391 | 4 | 390 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002331633.1 | 0 | 7 | 391 | 4 | 390 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002331634.1 | 0 | 7 | 391 | 4 | 390 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002529096.1 | 0 | 13 | 391 | 10 | 388 | Polygalacturonase precursor, putative [Ricinus communis] |
| RefSeq | XP_002529097.1 | 0 | 7 | 391 | 5 | 388 | Polygalacturonase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1czf_B | 1e-18 | 128 | 376 | 111 | 355 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
| PDB | 1czf_A | 1e-18 | 128 | 376 | 111 | 355 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
| PDB | 1bhe_A | 8e-18 | 122 | 363 | 117 | 361 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1ib4_B | 2e-17 | 121 | 377 | 81 | 333 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1ib4_A | 2e-17 | 121 | 377 | 81 | 333 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
