| Basic Information | |
|---|---|
| Species | Cucumis sativus |
| Cazyme ID | Cucsa.034590.1 |
| Family | GH28 |
| Protein Properties | Length: 393 Molecular Weight: 41096 Isoelectric Point: 6.0646 |
| Chromosome | Chromosome/Scaffold: 00444 Start: 429945 End: 433070 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 51 | 380 | 0 |
| ANACGSSEPATIYVPNGAFYIQSGNFSGPCKNNAITIVINGTLIASSNIQVLAQSQAWIAFRQINGLSIYGGVIDGQGIGLWNCKHSGKSCPDGATNLEI SHAQNVHVNGLSSINSQMFNIVVYGCENVQIQGVNVSSAGDSPNTDGIHVQQSLNVNISSTSIGTGDDCISIGPGTTNLWMENIKCGPGHGISIGSLGRQ VEEAGVENVTVTTATFTGTQNGVRIKSWGRPSNAFATKILFQHIRFYNVNNPILIDQNYCPNNQGCPGQASGVKVSDVTYQDVNGTSASEVAINFDCSPT NPCTGITLEDIQLTYNNQIPKASCKNARGT | |||
| Full Sequence |
|---|
| Protein Sequence Length: 393 Download |
| MPLVGNLPLL SLLFLFLNHG LAAGSTFNIV SLGAIADGKT DASHAFQEAW ANACGSSEPA 60 TIYVPNGAFY IQSGNFSGPC KNNAITIVIN GTLIASSNIQ VLAQSQAWIA FRQINGLSIY 120 GGVIDGQGIG LWNCKHSGKS CPDGATNLEI SHAQNVHVNG LSSINSQMFN IVVYGCENVQ 180 IQGVNVSSAG DSPNTDGIHV QQSLNVNISS TSIGTGDDCI SIGPGTTNLW MENIKCGPGH 240 GISIGSLGRQ VEEAGVENVT VTTATFTGTQ NGVRIKSWGR PSNAFATKIL FQHIRFYNVN 300 NPILIDQNYC PNNQGCPGQA SGVKVSDVTY QDVNGTSASE VAINFDCSPT NPCTGITLED 360 IQLTYNNQIP KASCKNARGT ASGPLQPRSC LA* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam00295 | Glyco_hydro_28 | 6.0e-72 | 54 | 382 | 331 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02218 | PLN02218 | 3.0e-79 | 23 | 388 | 373 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 1.0e-79 | 27 | 392 | 374 | + Probable polygalacturonase | ||
| PLN02188 | PLN02188 | 3.0e-91 | 22 | 390 | 376 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN02155 | PLN02155 | 2.0e-116 | 22 | 391 | 371 | + polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAC26510.1 | 0 | 22 | 391 | 22 | 392 | polygalacturonase precursor [Cucumis melo] |
| GenBank | ABD33834.1 | 0 | 10 | 391 | 10 | 393 | polygalacturonase [Prunus domestica subsp. insititia] |
| GenBank | ABO71786.1 | 0 | 22 | 391 | 22 | 392 | polygalacturonase [Cucumis melo] |
| EMBL | CAH18935.1 | 0 | 10 | 391 | 17 | 398 | polygalacturonase [Pyrus communis] |
| RefSeq | XP_002529090.1 | 0 | 6 | 391 | 8 | 393 | Polygalacturonase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 2e-17 | 119 | 364 | 113 | 362 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1nhc_F | 0.000000000000003 | 121 | 382 | 77 | 335 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 0.000000000000003 | 121 | 382 | 77 | 335 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_D | 0.000000000000003 | 121 | 382 | 77 | 335 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_C | 0.000000000000003 | 121 | 382 | 77 | 335 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
