| Basic Information | |
|---|---|
| Species | Cucumis sativus |
| Cazyme ID | Cucsa.038070.1 |
| Family | GH28 |
| Protein Properties | Length: 281 Molecular Weight: 30417.5 Isoelectric Point: 7.6554 |
| Chromosome | Chromosome/Scaffold: 00493 Start: 119024 End: 120702 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| GH28 | 155 | 272 | 8.7e-37 |
| DCISIGDGTNNLFMSDIKCGPAMVIGSLGKEVNENGVENIRLMNTVFTKSDNGVRIKTSPTSSNGFVKHVVFENITMHNVKHPILIDQNYCPNNQGCSVE DSGVKISDVTYKNIEGTS | |||
| Full Sequence |
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| Protein Sequence Length: 281 Download |
| MANPTKSLVF VLFFHLFIQI SSAGNYNVIT FGAKPDGKTD STQSFLKAWM SACSSLTRST 60 INVPKGRFLL TSITFRGPCK NSNITFQLNG TLVAPLDYNA LGDSRYWILF TKVNGISFIG 120 GNIDGKGTDY WACKGSGKKC PPGARLQQCD GQEYDCISIG DGTNNLFMSD IKCGPAMVIG 180 SLGKEVNENG VENIRLMNTV FTKSDNGVRI KTSPTSSNGF VKHVVFENIT MHNVKHPILI 240 DQNYCPNNQG CSVEDSGVKI SDVTYKNIEG TSATAEEEGE * |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam00295 | Glyco_hydro_28 | 5.0e-31 | 155 | 268 | 116 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN03003 | PLN03003 | 2.0e-35 | 6 | 267 | 328 | + Probable polygalacturonase At3g15720 | ||
| PLN03010 | PLN03010 | 4.0e-37 | 11 | 265 | 311 | + polygalacturonase | ||
| PLN02155 | PLN02155 | 2.0e-38 | 124 | 268 | 147 | + polygalacturonase | ||
| PLN02155 | PLN02155 | 5.0e-45 | 7 | 145 | 139 | + polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABD33834.1 | 0 | 7 | 274 | 9 | 341 | polygalacturonase [Prunus domestica subsp. insititia] |
| EMBL | CAB75804.1 | 0 | 23 | 274 | 20 | 331 | polygalacturonase-like protein [Arabidopsis thaliana] |
| RefSeq | XP_002331632.1 | 0 | 8 | 274 | 6 | 337 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002529088.1 | 0 | 1 | 274 | 1 | 254 | conserved hypothetical protein [Ricinus communis] |
| RefSeq | XP_002529093.1 | 0 | 26 | 274 | 30 | 267 | Polygalacturonase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2iq7_G | 0.000000001 | 143 | 275 | 169 | 296 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_F | 0.000000001 | 143 | 275 | 169 | 296 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_E | 0.000000001 | 143 | 275 | 169 | 296 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_D | 0.000000001 | 143 | 275 | 169 | 296 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_C | 0.000000001 | 143 | 275 | 169 | 296 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| Transmembrane Domains | ||||
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| Start | End | |||
| 7 | 29 | |||
| Signal Peptide | ||||
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| Cleavage Site | ||||
| 23 | ||||
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| DY287475 | 285 | 25 | 244 | 0 |
| DY294674 | 290 | 25 | 246 | 0 |
| FC888378 | 265 | 25 | 224 | 0 |
| EY917018 | 140 | 9 | 145 | 0 |
| AW218156 | 147 | 1 | 145 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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