| Basic Information | |
|---|---|
| Species | Cucumis sativus |
| Cazyme ID | Cucsa.039090.1 |
| Family | GT30 |
| Protein Properties | Length: 443 Molecular Weight: 49061.5 Isoelectric Point: 9.8555 |
| Chromosome | Chromosome/Scaffold: 00511 Start: 4399 End: 10658 |
| Description | KDO transferase A |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| GT30 | 41 | 221 | 0 |
| RWPERLGRPSHARPPGPLLWFHAVSLGEGLATIPIIKQCIQRRPDLVVLMTTTTYSAFQVVKNCLPTDVIYQFAPLDTAAAIDTFIEYWKPKVIILMESE LWPNLILGASQRGIAMALLNARMSAMSFNRWSIPVFLPLISFMLSKFSLILPLSNLQAIRFQLLQASPLVISFAGDLKFAV | |||
| Full Sequence |
|---|
| Protein Sequence Length: 443 Download |
| MAATKGKLIY KVYRALSYGL SPLLYLHLRW RVLRGLEHPF RWPERLGRPS HARPPGPLLW 60 FHAVSLGEGL ATIPIIKQCI QRRPDLVVLM TTTTYSAFQV VKNCLPTDVI YQFAPLDTAA 120 AIDTFIEYWK PKVIILMESE LWPNLILGAS QRGIAMALLN ARMSAMSFNR WSIPVFLPLI 180 SFMLSKFSLI LPLSNLQAIR FQLLQASPLV ISFAGDLKFA VEDVGMSKEE IKKVEDLRSQ 240 LAHRQAWMAS SIHRGEEEVI LQVHRMLLEA HPNLVTVIVP RHPQHGKEIA LEMKKEGQNV 300 ALRSQGENIT SGTNVYIVDT LGELRYLYGI TSIAVVGGSF LPGLAGHNIS EAAAAGCAVL 360 TGPHIGHFSS MVAKLQQFNP MSVLQVHGKV DLEEAIKYLL KDDKVLEAHR MAAKQAQQAL 420 ASGIIVGTWN SLNSNVLRSA FG* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam13524 | Glyco_trans_1_2 | 0.002 | 351 | 421 | 72 | + Glycosyl transferases group 1. | ||
| pfam00534 | Glycos_transf_1 | 0.0001 | 256 | 415 | 163 | + Glycosyl transferases group 1. Mutations in this domain of human PIGA lead to disease (Paroxysmal Nocturnal haemoglobinuria). Members of this family transfer activated sugars to a variety of substrates, including glycogen, Fructose-6-phosphate and lipopolysaccharides. Members of this family transfer UDP, ADP, GDP or CMP linked sugars. The eukaryotic glycogen synthases may be distant members of this family. | ||
| pfam04413 | Glycos_transf_N | 1.0e-59 | 38 | 222 | 187 | + 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase). Members of this family transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Members of the family transfer UDP, ADP, GDP or CMP linked sugars. The Glycos_transf_N region is flanked at the N-terminus by a signal peptide and at the C-terminus by Glycos_transf_1 (pfam00534). The eukaryotic glycogen synthases may be distant members of this bacterial family. | ||
| COG1519 | KdtA | 7.0e-116 | 13 | 434 | 428 | + 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane] | ||
| PRK05749 | PRK05749 | 8.0e-125 | 12 | 414 | 405 | + 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0005529 | Interacting selectively and non-covalently with any carbohydrate, which includes monosaccharides, oligosaccharides and polysaccharides as well as substances derived from monosaccharides by reduction of the carbonyl group (alditols), by oxidation of one or more hydroxy groups to afford the corresponding aldehydes, ketones, or carboxylic acids, or by replacement of one or more hydroxy group(s) by a hydrogen atom. Cyclitols are generally not regarded as carbohydrates." [CHEBI:16646, GOC:mah] |
| GO:0005975 | carbohydrate metabolic process |
| GO:0009058 | biosynthetic process |
| GO:0016740 | transferase activity |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABE80128.2 | 0 | 10 | 416 | 8 | 414 | Three-deoxy-D-manno-octulosonic-acid transferase, N-terminal [Medicago truncatula] |
| EMBL | CBI30224.1 | 0 | 1 | 385 | 1 | 385 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002277784.1 | 0 | 1 | 441 | 1 | 440 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002322900.1 | 0 | 1 | 441 | 3 | 442 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002528642.1 | 0 | 2 | 439 | 6 | 442 | 3-deoxy-d-manno-octulosonic-acid transferase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2xcu_D | 9e-23 | 59 | 378 | 43 | 320 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2xcu_C | 9e-23 | 59 | 378 | 43 | 320 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2xcu_B | 9e-23 | 59 | 378 | 43 | 320 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2xcu_A | 9e-23 | 59 | 378 | 43 | 320 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2xci_D | 9e-23 | 59 | 378 | 43 | 320 | A Chain A, Membrane-Embedded Monofunctional Glycosyltransferase Waaa Of Aquifex Aeolicus, Substrate-Free Form |
