| Basic Information | |
|---|---|
| Species | Cucumis sativus |
| Cazyme ID | Cucsa.042430.1 |
| Family | GH28 |
| Protein Properties | Length: 395 Molecular Weight: 42563.6 Isoelectric Point: 7.432 |
| Chromosome | Chromosome/Scaffold: 00540 Start: 826138 End: 828035 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 54 | 383 | 0 |
| AWSEACTNNGGGIVLIPAKGRFLVLPLLLQGPCHGFIRIQLDGELLAPLDEHFATGDYWLSIDQVNNLFIDGLGSLDGRGSTAWPSTSHNRPVSMRLNGI NNARITNIKSYNSKLFHFAMHGCRDVTFDHVTVIAPANSPNTDGIHISSSSGINIMHSTIGTGDDCISLGPGSKFINITNIQCGPGHGISIGSLGKYPNE EDVFEVTVRDSTFIGTSNGVRIKTWSSSYSSMVSKVTFLNLQMNNVKNPIIIDQNYCPGSCGSQKMMSKSMVQIKDVRYEGIRGSSNTQVAVDFECSEVV PCQGIVLQDINLPFNGGGRTTSNCHNVRGS | |||
| Full Sequence |
|---|
| Protein Sequence Length: 395 Download |
| MGLNCLAMRC VMSNMILLLC IFKYCNAQSK VFDIMHFGAK PDAITDNSKA LSSAWSEACT 60 NNGGGIVLIP AKGRFLVLPL LLQGPCHGFI RIQLDGELLA PLDEHFATGD YWLSIDQVNN 120 LFIDGLGSLD GRGSTAWPST SHNRPVSMRL NGINNARITN IKSYNSKLFH FAMHGCRDVT 180 FDHVTVIAPA NSPNTDGIHI SSSSGINIMH STIGTGDDCI SLGPGSKFIN ITNIQCGPGH 240 GISIGSLGKY PNEEDVFEVT VRDSTFIGTS NGVRIKTWSS SYSSMVSKVT FLNLQMNNVK 300 NPIIIDQNYC PGSCGSQKMM SKSMVQIKDV RYEGIRGSSN TQVAVDFECS EVVPCQGIVL 360 QDINLPFNGG GRTTSNCHNV RGSAFGHQLP PSCL* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN03010 | PLN03010 | 6.0e-75 | 12 | 394 | 388 | + polygalacturonase | ||
| pfam00295 | Glyco_hydro_28 | 5.0e-85 | 59 | 385 | 334 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02793 | PLN02793 | 2.0e-85 | 30 | 394 | 379 | + Probable polygalacturonase | ||
| PLN02155 | PLN02155 | 5.0e-89 | 15 | 394 | 386 | + polygalacturonase | ||
| PLN02188 | PLN02188 | 2.0e-106 | 27 | 393 | 377 | + polygalacturonase/glycoside hydrolase family protein | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAX45476.1 | 0 | 28 | 394 | 28 | 400 | polygalacturonase [Lilium longiflorum] |
| GenBank | ACN85327.1 | 0 | 11 | 394 | 5 | 405 | polygalacturonase precursor [Oryza brachyantha] |
| RefSeq | XP_002273801.1 | 0 | 1 | 394 | 1 | 396 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002282573.1 | 0 | 31 | 393 | 27 | 394 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002437276.1 | 0 | 22 | 394 | 22 | 404 | hypothetical protein SORBIDRAFT_10g024020 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1nhc_F | 7e-20 | 129 | 384 | 80 | 334 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 7e-20 | 129 | 384 | 80 | 334 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_D | 7e-20 | 129 | 384 | 80 | 334 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_C | 7e-20 | 129 | 384 | 80 | 334 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_B | 7e-20 | 129 | 384 | 80 | 334 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
