Basic Information | |
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Species | Cucumis sativus |
Cazyme ID | Cucsa.045020.1 |
Family | PL1 |
Protein Properties | Length: 381 Molecular Weight: 42321.2 Isoelectric Point: 8.5334 |
Chromosome | Chromosome/Scaffold: 00542 Start: 1125363 End: 1127349 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 101 | 300 | 0 |
IVFARDMVITLKRELMVNSYKTIDGRGANVEISNGPCITIQNVSHVIIHGISIHDCKPGKPGRVRSSVTHCGDRQQSDGDAISIFSSSHIWIDHCYLARC TDGLIDVIHASTAVTISNNYFSQHDKVILLGHNDEFRDDRIMRVTVAFNRFGAGLVQRMPRVRFGYAHVANNWYNKWEMYAMGGSADPTIFSQGNYFMAP |
Full Sequence |
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Protein Sequence Length: 381 Download |
MASPLLLSAF LFFLPTVIST PKPNNYYSKP SLNPIDACWR NNRNWAANRR ALADCAVGFG 60 SDALGGKFGS IYVVTDPSDD PEYPEPGTLR FGVIQMQPLW IVFARDMVIT LKRELMVNSY 120 KTIDGRGANV EISNGPCITI QNVSHVIIHG ISIHDCKPGK PGRVRSSVTH CGDRQQSDGD 180 AISIFSSSHI WIDHCYLARC TDGLIDVIHA STAVTISNNY FSQHDKVILL GHNDEFRDDR 240 IMRVTVAFNR FGAGLVQRMP RVRFGYAHVA NNWYNKWEMY AMGGSADPTI FSQGNYFMAP 300 NDPFSKQVTK REVYESGWKS WKWRSSNDVF MNGAYFIPTG WGSCTPFYTQ AQAFPVAHGS 360 LAPLLTIAAG PLRCVLAKPC * |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3866 | PelB | 8.0e-29 | 112 | 298 | 201 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 1.0e-59 | 112 | 297 | 216 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 3.0e-74 | 106 | 301 | 207 | + Amb_all domain. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | NP_172656.1 | 0 | 1 | 380 | 1 | 384 | pectate lyase family protein [Arabidopsis thaliana] |
Swiss-Prot | O65388 | 0 | 1 | 380 | 1 | 390 | PEL2_ARATH RecName: Full=Putative pectate lyase 2; Flags: Precursor |
RefSeq | XP_002263615.1 | 0 | 2 | 380 | 18 | 397 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002331545.1 | 0 | 11 | 380 | 26 | 392 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002518442.1 | 0 | 18 | 380 | 31 | 390 | Pectate lyase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 33 | 370 | 2 | 343 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 33 | 370 | 2 | 343 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 1e-21 | 101 | 299 | 50 | 248 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1vbl_A | 5e-19 | 115 | 297 | 128 | 330 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
PDB | 1bn8_A | 0.000000000000002 | 180 | 317 | 205 | 370 | A Chain A, Bacillus Subtilis Pectate Lyase |