| Basic Information | |
|---|---|
| Species | Cucumis sativus |
| Cazyme ID | Cucsa.056540.1 |
| Family | GH28 |
| Protein Properties | Length: 381 Molecular Weight: 40903.4 Isoelectric Point: 8.6488 |
| Chromosome | Chromosome/Scaffold: 00603 Start: 117498 End: 119734 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 41 | 367 | 0 |
| HACSSSKPATIYVPKAKFYVRSATFNGPCKNNDITIRIDGTLVAPSDFRLTSNSENWILFHNVNGVTVIGGIIDGQGTQLWACKNSANTCPSGTTSLEFT NSQNILVNGLTSLNSQIFHIVVNQCRNVKMQGLKVFAASNSPNTDGIHVGDSSHVTILNSNIRTGDDCISIGPGSSNLWIENVVCGPGHGISIGSLGKEL KEKGVQNVTVKSCKFMDTQNGVRIKSWGRQSSGFAKDIRFQHLTMTNVQNPIIIDQNYCPHNQGCPGQSSGVTVSDVKYKNIHGTSATPVAIKFDCSPKF PCKGIKLEDVKLSYKNQVAKASCSNAQ | |||
| Full Sequence |
|---|
| Protein Sequence Length: 381 Download |
| MLFNNLAAFA TPLTFNVLDF GTKPNNAETD SSKALQLAWM HACSSSKPAT IYVPKAKFYV 60 RSATFNGPCK NNDITIRIDG TLVAPSDFRL TSNSENWILF HNVNGVTVIG GIIDGQGTQL 120 WACKNSANTC PSGTTSLEFT NSQNILVNGL TSLNSQIFHI VVNQCRNVKM QGLKVFAASN 180 SPNTDGIHVG DSSHVTILNS NIRTGDDCIS IGPGSSNLWI ENVVCGPGHG ISIGSLGKEL 240 KEKGVQNVTV KSCKFMDTQN GVRIKSWGRQ SSGFAKDIRF QHLTMTNVQN PIIIDQNYCP 300 HNQGCPGQSS GVTVSDVKYK NIHGTSATPV AIKFDCSPKF PCKGIKLEDV KLSYKNQVAK 360 ASCSNAQGFD VGLVQPMGCF * 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02218 | PLN02218 | 2.0e-92 | 7 | 376 | 377 | + polygalacturonase ADPG | ||
| pfam00295 | Glyco_hydro_28 | 8.0e-96 | 43 | 366 | 327 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02793 | PLN02793 | 1.0e-103 | 15 | 380 | 374 | + Probable polygalacturonase | ||
| PLN02188 | PLN02188 | 2.0e-110 | 4 | 379 | 383 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN02155 | PLN02155 | 1.0e-129 | 15 | 380 | 367 | + polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAC26511.1 | 0 | 4 | 380 | 40 | 416 | polygalacturonase precursor [Cucumis melo] |
| GenBank | AAC64184.1 | 0 | 7 | 380 | 20 | 393 | endopolygalacturonase [Prunus persica] |
| GenBank | ABC72324.1 | 0 | 7 | 380 | 20 | 393 | endo-polygalacturonase [Prunus persica] |
| GenBank | ABC72325.1 | 0 | 7 | 380 | 20 | 393 | endo-polygalacturonase [Prunus persica] |
| GenBank | ABV32553.1 | 0 | 7 | 380 | 20 | 393 | endopolygalacturonase [Prunus persica] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 1e-17 | 137 | 317 | 154 | 333 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1ib4_B | 6e-17 | 113 | 325 | 84 | 294 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1ib4_A | 6e-17 | 113 | 325 | 84 | 294 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1ia5_A | 6e-17 | 113 | 325 | 84 | 294 | A Chain A, Polygalacturonase From Aspergillus Aculeatus |
| PDB | 1hg8_A | 4e-16 | 72 | 348 | 41 | 327 | A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus Fusarium Moniliforme |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| DV633377 | 227 | 1 | 227 | 0 |
| DY281549 | 323 | 7 | 328 | 0 |
| JZ191937 | 299 | 82 | 380 | 0 |
| JZ194028 | 287 | 77 | 363 | 0 |
| JZ192826 | 286 | 80 | 365 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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