| Basic Information | |
|---|---|
| Species | Cucumis sativus |
| Cazyme ID | Cucsa.063760.5 |
| Family | GH33 |
| Protein Properties | Length: 327 Molecular Weight: 36623.6 Isoelectric Point: 5.8707 |
| Chromosome | Chromosome/Scaffold: 00674 Start: 160602 End: 164226 |
| Description | BNR/Asp-box repeat family protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| GH33 | 19 | 311 | 6.1e-28 |
| ANSVPFNNCHASTIVEVDKDHYLVAYFGGTLEGAPDVKIWLQAFKNGSWHSPIVADEEPDIPMWNPVLFKLPSDELLLFYKVGQEVQKWSGCMKRSYDKG ITWTAREQLPPGILGPIKNKPILLENGVLLCGSSVESWNSWGAWMEVTSDSGRSWRKFGPIYMKNRSLSVIQPVPYQTANGNLRVLLRSFTGIDSICMSE SNDGGHNWSFAIPTNLPNPNSGIDGVKLRDGRLLLVYNTVSRGVLKVGLSLDDGDSWQDVMTLEDEPENEFSYPAVIEASDDSIHITYTYRRK | |||
| Full Sequence |
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| Protein Sequence Length: 327 Download |
| MGKGSYVDGP LQEEFTFPAN SVPFNNCHAS TIVEVDKDHY LVAYFGGTLE GAPDVKIWLQ 60 AFKNGSWHSP IVADEEPDIP MWNPVLFKLP SDELLLFYKV GQEVQKWSGC MKRSYDKGIT 120 WTAREQLPPG ILGPIKNKPI LLENGVLLCG SSVESWNSWG AWMEVTSDSG RSWRKFGPIY 180 MKNRSLSVIQ PVPYQTANGN LRVLLRSFTG IDSICMSESN DGGHNWSFAI PTNLPNPNSG 240 IDGVKLRDGR LLLVYNTVSR GVLKVGLSLD DGDSWQDVMT LEDEPENEFS YPAVIEASDD 300 SIHITYTYRR KQIKHVVFKL KVHEKH* |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| cd00260 | Sialidase | 0.004 | 111 | 277 | 204 | + Sialidases or neuraminidases function to bind and hydrolyze terminal sialic acid residues from various glycoconjugates as well as playing roles in pathogenesis, bacterial nutrition and cellular interactions. They have a six-bladed, beta-propeller fold with the non-viral sialidases containing 2-5 Asp-box motifs (most commonly Ser/Thr-X-Asp-[X]-Gly-X-Thr- Trp/Phe). This CD includes eubacterial, eukaryotic, and viral sialidases. | ||
| COG4692 | COG4692 | 6.0e-34 | 23 | 318 | 348 | + Predicted neuraminidase (sialidase) [Carbohydrate transport and metabolism] | ||
| pfam13088 | BNR_2 | 9.0e-94 | 38 | 304 | 282 | + BNR repeat-like domain. This family of proteins contains BNR-like repeats suggesting these proteins may act as sialidases. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAM61202.1 | 0 | 11 | 319 | 9 | 317 | unknown [Arabidopsis thaliana] |
| RefSeq | NP_001078763.1 | 0 | 11 | 319 | 20 | 328 | BNR/Asp-box repeat family protein [Arabidopsis thaliana] |
| RefSeq | NP_568864.2 | 0 | 11 | 319 | 9 | 317 | BNR/Asp-box repeat family protein [Arabidopsis thaliana] |
| RefSeq | XP_002263578.1 | 0 | 6 | 320 | 54 | 368 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002531744.1 | 0 | 1 | 319 | 1 | 319 | conserved hypothetical protein [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
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| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3b7f_A | 0.006 | 160 | 285 | 32 | 160 | A Chain A, Crystal Structure Of A Putative Glycosyl Hydrolase With Bnr Repeats (reut_b4987) From Ralstonia Eutropha Jmp134 At 2.20 A Resolution |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| EL689016 | 287 | 19 | 305 | 0 |
| ES962106 | 261 | 32 | 292 | 0 |
| DV137355 | 268 | 40 | 307 | 0 |
| EY114510 | 258 | 10 | 267 | 0 |
| DV145816 | 255 | 37 | 291 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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