| Basic Information | |
|---|---|
| Species | Cucumis sativus |
| Cazyme ID | Cucsa.065830.1 |
| Family | PL1 |
| Protein Properties | Length: 377 Molecular Weight: 41795.9 Isoelectric Point: 8.0602 |
| Chromosome | Chromosome/Scaffold: 00696 Start: 476065 End: 479437 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| PL1 | 107 | 285 | 0 |
| IFEVSGTIDLSSYLSVSSYKTVDGRGQRIKLTGKGLRLKECEHVIICNLEFEGGRGHDVDGIQIKPNSKHIWIDRCSLRDYDDGLIDITRASTDITISRC YFSHHDKTMLIGADPSHIGDRCIRVTIHHCFFDGTRQRHPRVRYAQVHLYNNYTRNWGIYAVCASVESKIYSQCNIYEA | |||
| Full Sequence |
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| Protein Sequence Length: 377 Download |
| MGNAHGHRKH FNHGVNTSPT TNAPSPSNKY SSSEPTSRNP SSSTNMQSLP YPHVDSSLRA 60 LAAQAEGFGR SAIGGLHGSV YCVTNLADDG PGSLRFGCRM KEPLWIIFEV SGTIDLSSYL 120 SVSSYKTVDG RGQRIKLTGK GLRLKECEHV IICNLEFEGG RGHDVDGIQI KPNSKHIWID 180 RCSLRDYDDG LIDITRASTD ITISRCYFSH HDKTMLIGAD PSHIGDRCIR VTIHHCFFDG 240 TRQRHPRVRY AQVHLYNNYT RNWGIYAVCA SVESKIYSQC NIYEAGEKKV AFKYLTEKAT 300 DKEKPSSGSI WSDGDLFVKD TQSGLLAPTA EHDLFHPSHH YSSWTVQPAT DALKHILQHC 360 TGCQNIPRPA DQPLVP* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam00544 | Pec_lyase_C | 6.0e-39 | 101 | 281 | 201 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| COG3866 | PelB | 8.0e-46 | 74 | 356 | 302 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| smart00656 | Amb_all | 3.0e-65 | 110 | 286 | 189 | + Amb_all domain. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABK93648.1 | 0 | 1 | 375 | 1 | 384 | unknown [Populus trichocarpa] |
| GenBank | ABK96132.1 | 0 | 1 | 375 | 1 | 387 | unknown [Populus trichocarpa] |
| RefSeq | XP_002277576.1 | 0 | 1 | 375 | 1 | 372 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002309435.1 | 0 | 48 | 374 | 4 | 330 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002323433.1 | 0 | 48 | 375 | 4 | 331 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 9.99995e-41 | 55 | 341 | 15 | 327 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 9.99995e-41 | 55 | 341 | 15 | 327 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1vbl_A | 3e-25 | 122 | 283 | 130 | 330 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
| PDB | 3zsc_A | 1e-24 | 107 | 283 | 49 | 246 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 3vmw_A | 4e-23 | 127 | 360 | 82 | 320 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
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| Hit | Length | Start | End | EValue |
| DY275282 | 326 | 46 | 371 | 0 |
| JG177860 | 304 | 66 | 369 | 0 |
| DW066041 | 301 | 70 | 370 | 0 |
| DY289690 | 305 | 48 | 348 | 0 |
| DY277275 | 310 | 49 | 358 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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