| Basic Information | |
|---|---|
| Species | Cucumis sativus |
| Cazyme ID | Cucsa.071480.1 |
| Family | GH28 |
| Protein Properties | Length: 298 Molecular Weight: 32561.7 Isoelectric Point: 7.6107 |
| Chromosome | Chromosome/Scaffold: 00755 Start: 22371 End: 23771 |
| Description | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 7 | 284 | 0 |
| DSWINFRYVDSLTVGGGGSLDGQGAIAWPRNDCRNNPNCRSLPTTMKFDFITNSKVHNLRSIDSKNNHFMLFGCSNINITNIRISAPGDSPNTDGIKIGT SDHIDIRNSIIGTGDDCISMLSGSKNIYISNVVCGPGHGISIGSLGKYKEEENVMGITVKNCTFKNTTDGVRIKTWATPLMGTAYNIYYEDIFMDGVANP IIIDQEYCPVSPCNHDESSRIQISYVTFKNIWGSSKSASAVTLRCSERKPCKNIVLDNINLISSPNVGRLFSSCFHVH | |||
| Full Sequence |
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| Protein Sequence Length: 298 Download |
| MSSLYGDSWI NFRYVDSLTV GGGGSLDGQG AIAWPRNDCR NNPNCRSLPT TMKFDFITNS 60 KVHNLRSIDS KNNHFMLFGC SNINITNIRI SAPGDSPNTD GIKIGTSDHI DIRNSIIGTG 120 DDCISMLSGS KNIYISNVVC GPGHGISIGS LGKYKEEENV MGITVKNCTF KNTTDGVRIK 180 TWATPLMGTA YNIYYEDIFM DGVANPIIID QEYCPVSPCN HDESSRIQIS YVTFKNIWGS 240 SKSASAVTLR CSERKPCKNI VLDNINLISS PNVGRLFSSC FHVHGFSYGN QSPYSCL* 300 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN03003 | PLN03003 | 3.0e-63 | 7 | 287 | 285 | + Probable polygalacturonase At3g15720 | ||
| PLN02218 | PLN02218 | 3.0e-66 | 9 | 267 | 262 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 5.0e-71 | 9 | 297 | 291 | + Probable polygalacturonase | ||
| pfam00295 | Glyco_hydro_28 | 7.0e-83 | 2 | 271 | 272 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02188 | PLN02188 | 2.0e-95 | 5 | 296 | 293 | + polygalacturonase/glycoside hydrolase family protein | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| RefSeq | NP_177961.2 | 0 | 3 | 297 | 108 | 403 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | NP_180874.1 | 0 | 7 | 296 | 110 | 402 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | XP_002273801.1 | 0 | 4 | 297 | 104 | 396 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002300425.1 | 0 | 7 | 296 | 78 | 367 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002314146.1 | 0 | 7 | 297 | 102 | 392 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1ib4_B | 1e-17 | 17 | 283 | 75 | 333 | A Chain A, Structure And Mechanisim Of Core 2 Beta1,6-N- Acetylglucosaminyltransferase: A Metal-Ion Independent Gt-A Glycosyltransferase |
| PDB | 1ib4_A | 1e-17 | 17 | 283 | 75 | 333 | A Chain A, Structure And Mechanisim Of Core 2 Beta1,6-N- Acetylglucosaminyltransferase: A Metal-Ion Independent Gt-A Glycosyltransferase |
| PDB | 1ia5_A | 1e-17 | 17 | 283 | 75 | 333 | A Chain A, Polygalacturonase From Aspergillus Aculeatus |
| PDB | 1bhe_A | 6e-17 | 22 | 269 | 115 | 363 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1hg8_A | 1e-16 | 17 | 245 | 72 | 309 | A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus Fusarium Moniliforme |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| GR462194 | 262 | 7 | 267 | 0 |
| GR453139 | 257 | 7 | 262 | 0 |
| CX191860 | 264 | 7 | 267 | 0 |
| GR457452 | 259 | 12 | 267 | 0 |
| GR463354 | 272 | 26 | 296 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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