| Basic Information | |
|---|---|
| Species | Cucumis sativus |
| Cazyme ID | Cucsa.085800.2 |
| Family | CBM53 |
| Protein Properties | Length: 1153 Molecular Weight: 130276 Isoelectric Point: 6.4733 |
| Chromosome | Chromosome/Scaffold: 00870 Start: 184590 End: 195919 |
| Description | starch synthase 3 |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CBM53 | 269 | 352 | 2.3e-31 |
| QNIELFFNRSLSILNGEQDVLIMGAFNDWKWKSFTTRLNKANIDGDWWSCQIHVPKEAYKIDFVFLNGKDVYENNDGKDFCIYV | |||
| CBM53 | 443 | 534 | 7.7e-33 |
| GDSVRLYYNKNSGPLAQAEEIWIHGGHNNWKDGLSIIEMLVFAVTKDKCDWWYADVTVPDRALVLDWVLADGPPKKANIYDNNKRLDFHAIV | |||
| CBM53 | 607 | 694 | 1.5e-34 |
| SAVTVFYNPANTPLNGKPEVWFRCSFNRWSHRKGPLPPQKMLPVDGGSHVKATVKVPLDAYMMDFVFSEREDGGIFDNKNGMDYHIPV | |||
| GT5 | 705 | 1148 | 0 |
| HIVHIAVEMAPIAKVGGLGDVVTSLSRAIQDLNHNVDIVLPKYDCLNLTNVENFHHRQNYFWGGTEIKVWFGKVEGLSVYFLEPQNGFFWTGCIYGCAND GERFGFFCHAALEFLLQGGFHPDIIHCHDWSSAPVSWLFKEQYMHYGLSKARVVFTIHNLEFGAPLIGRAMLYSDKATTVSPKYSKEVSGNPVIAPHLHK FHGIVNGIDPDIWDPYNDKFIPVSYTSENVVEGKRAAKEALQQRLGLSRSDLPVVGIITRLTHQKGIHLIKHAIWRTLDRGGQVVLLGSAPDPRIQNDFV NLANELHSSFPDRARLCLTYDEPLSHLIYAGGDLILVPSIFEPCGLTQLTAMRYGSIPVVRKTGGLYDTVFDVDHDKERAQAAGLEPNGFSFEGADPSGV DYALNRAISAWYNDRSWFHSLCKKVMEQDWSWNRPALDYLELYH | |||
| Full Sequence |
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| Protein Sequence Length: 1153 Download |
| MEVALQAHVS RCWRTTNLSE AQGGSLRFRL FHGNRASSTT STTLSPLSFR GHLVAGRSFR 60 IVASARQSDS SRRRSRKLST AKLESSAAKG FKPKVPVGAS TPERDDEEEE GSATLKSSAH 120 TKPNQAAVKL TVGDKVDLAA KVSQKDEDVQ KKIGNDAERK SSLTSKSTSV DENNAAIDNG 180 MAGRLSGIGR RLQEKEEENE PDETVSDVLD NSEEDEPLKT EEKLTEESLK LKLEMEANAK 240 RQEIEKLAEE NFLGGIQVFV FPPVVRPDQN IELFFNRSLS ILNGEQDVLI MGAFNDWKWK 300 SFTTRLNKAN IDGDWWSCQI HVPKEAYKID FVFLNGKDVY ENNDGKDFCI YVEGGMDAST 360 FEDFLLEEKR KELERLAKER AERERQEEEL KRIEAEKVAS EADRAQAKVE TEKRREVLKH 420 LLKTAVKSVD NVWYIEPTLF QGGDSVRLYY NKNSGPLAQA EEIWIHGGHN NWKDGLSIIE 480 MLVFAVTKDK CDWWYADVTV PDRALVLDWV LADGPPKKAN IYDNNKRLDF HAIVPKAISE 540 EVYWVEEEHM TYRKLQEERR LREEAIRAKA ERTARMKSET KERTMKNFLL SQKHIVFTDP 600 VDVQAGSAVT VFYNPANTPL NGKPEVWFRC SFNRWSHRKG PLPPQKMLPV DGGSHVKATV 660 KVPLDAYMMD FVFSEREDGG IFDNKNGMDY HIPVVGGINK EPPLHIVHIA VEMAPIAKVG 720 GLGDVVTSLS RAIQDLNHNV DIVLPKYDCL NLTNVENFHH RQNYFWGGTE IKVWFGKVEG 780 LSVYFLEPQN GFFWTGCIYG CANDGERFGF FCHAALEFLL QGGFHPDIIH CHDWSSAPVS 840 WLFKEQYMHY GLSKARVVFT IHNLEFGAPL IGRAMLYSDK ATTVSPKYSK EVSGNPVIAP 900 HLHKFHGIVN GIDPDIWDPY NDKFIPVSYT SENVVEGKRA AKEALQQRLG LSRSDLPVVG 960 IITRLTHQKG IHLIKHAIWR TLDRGGQVVL LGSAPDPRIQ NDFVNLANEL HSSFPDRARL 1020 CLTYDEPLSH LIYAGGDLIL VPSIFEPCGL TQLTAMRYGS IPVVRKTGGL YDTVFDVDHD 1080 KERAQAAGLE PNGFSFEGAD PSGVDYALNR AISAWYNDRS WFHSLCKKVM EQDWSWNRPA 1140 LDYLELYHAA RK* 1200 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02939 | PLN02939 | 4.0e-148 | 704 | 1150 | 493 | + transferase, transferring glycosyl groups | ||
| TIGR02095 | glgA | 6.0e-155 | 704 | 1150 | 489 | + glycogen/starch synthase, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate [Energy metabolism, Biosynthesis and degradation of polysaccharides]. | ||
| PRK00654 | glgA | 1.0e-169 | 704 | 1152 | 486 | + glycogen synthase; Provisional | ||
| cd03791 | GT1_Glycogen_synthase_DULL1_like | 3.0e-179 | 705 | 1148 | 489 | + This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms. | ||
| PLN02316 | PLN02316 | 0 | 78 | 1152 | 1077 | + synthase/transferase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0009058 | biosynthetic process |
| GO:2001070 | starch binding |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACT09059.1 | 0.002 | 1 | 150 | 1 | 136 | starch synthase III precursor [Solanum lycopersicum] |
| GenBank | ACT09059.1 | 0 | 197 | 1152 | 270 | 1228 | starch synthase III precursor [Solanum lycopersicum] |
| RefSeq | XP_002269011.1 | 0 | 76 | 1152 | 33 | 1140 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002305571.1 | 0 | 78 | 1152 | 1 | 1017 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002518476.1 | 0 | 78 | 1152 | 1 | 1058 | starch synthase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3d1j_A | 0 | 704 | 1148 | 1 | 474 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
| PDB | 3guh_A | 0 | 704 | 1148 | 1 | 474 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
| PDB | 2r4u_A | 0 | 704 | 1148 | 1 | 474 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
| PDB | 2r4t_A | 0 | 704 | 1148 | 1 | 474 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
| PDB | 2qzs_A | 0 | 704 | 1148 | 1 | 474 | A Chain A, Crystal Structure Of Wild-Type E.Coli Gs In Complex With Adp And Glucose(Wtgsb) |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| HO778003 | 702 | 238 | 939 | 0 |
| HO794758 | 567 | 586 | 1152 | 0 |
| HO651392 | 413 | 741 | 1153 | 0 |
| HO794758 | 104 | 258 | 356 | 0.024 |
| HO794758 | 134 | 410 | 541 | 1.5 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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