| Basic Information | |
|---|---|
| Species | Cucumis sativus |
| Cazyme ID | Cucsa.086360.1 |
| Family | GH28 |
| Protein Properties | Length: 409 Molecular Weight: 43322.6 Isoelectric Point: 7.0047 |
| Chromosome | Chromosome/Scaffold: 00870 Start: 513761 End: 515324 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 56 | 385 | 0 |
| KDACASTTPSKVLIPKGSYGLSQSNLKGPCKSPIELQIEGTLQASPDPKGDGLLLLEYIDQLTVSGTGVLDGQGKAGWEKNDCHLKKICTKLPMTLKLNF ITNSIVKDITSLDSKNYHINLLGCKNLTIDHVTITAPENSPNTDGIHVSSSEQINILNTNIATGDDCISVGDTNKQIVISDVTCGPGHGISIGSLGKYSK EKEVVGVTVKKCKLTSTTNGVRIKTWPDSVGTFPATDMHFEDIEMVNVSNPIIIDQEYCPWNQCNRKVPSKIKISKVSFKNIRGTSATAVAVKIVCSQSN PCEEVEVADIDLTYSGSEGPIKSQCANVKP | |||
| Full Sequence |
|---|
| Protein Sequence Length: 409 Download |
| MGLRSNFVTL LPLFLLLVSN AKGQSAAGGG VFDVTSFGAK PNGDITGVRP LLVAWKDACA 60 STTPSKVLIP KGSYGLSQSN LKGPCKSPIE LQIEGTLQAS PDPKGDGLLL LEYIDQLTVS 120 GTGVLDGQGK AGWEKNDCHL KKICTKLPMT LKLNFITNSI VKDITSLDSK NYHINLLGCK 180 NLTIDHVTIT APENSPNTDG IHVSSSEQIN ILNTNIATGD DCISVGDTNK QIVISDVTCG 240 PGHGISIGSL GKYSKEKEVV GVTVKKCKLT STTNGVRIKT WPDSVGTFPA TDMHFEDIEM 300 VNVSNPIIID QEYCPWNQCN RKVPSKIKIS KVSFKNIRGT SATAVAVKIV CSQSNPCEEV 360 EVADIDLTYS GSEGPIKSQC ANVKPVITGK QNPPICGEPA PIDGPSTD* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02155 | PLN02155 | 5.0e-67 | 25 | 396 | 376 | + polygalacturonase | ||
| PLN02218 | PLN02218 | 7.0e-68 | 34 | 393 | 369 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 4.0e-76 | 31 | 396 | 376 | + Probable polygalacturonase | ||
| pfam00295 | Glyco_hydro_28 | 2.0e-100 | 59 | 384 | 328 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02188 | PLN02188 | 2.0e-111 | 18 | 396 | 392 | + polygalacturonase/glycoside hydrolase family protein | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| DDBJ | BAA89476.1 | 0 | 1 | 396 | 1 | 393 | polygalacturonase [Salix gilgiana] |
| DDBJ | BAA89477.1 | 0 | 1 | 396 | 1 | 393 | polygalacturonase [Salix gilgiana] |
| DDBJ | BAA89478.1 | 0 | 1 | 396 | 1 | 393 | polygalacturonase [Salix gilgiana] |
| DDBJ | BAA89479.1 | 0 | 21 | 396 | 23 | 393 | polygalacturonase [Salix gilgiana] |
| RefSeq | XP_002329175.1 | 0 | 1 | 396 | 1 | 393 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 2e-21 | 119 | 368 | 113 | 362 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1nhc_F | 0.00000000000001 | 117 | 383 | 72 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 0.00000000000001 | 117 | 383 | 72 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_D | 0.00000000000001 | 117 | 383 | 72 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_C | 0.00000000000001 | 117 | 383 | 72 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
