Basic Information | |
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Species | Cucumis sativus |
Cazyme ID | Cucsa.086750.1 |
Family | CE8 |
Protein Properties | Length: 318 Molecular Weight: 34464.2 Isoelectric Point: 6.3626 |
Chromosome | Chromosome/Scaffold: 00873 Start: 142353 End: 144530 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 18 | 303 | 0 |
KVMSDGTGNFKTVTEAIASVPADNKKRVVIWIGVGVYKEKLKIDRNKPFVTLYGSDPKNMPKLTFDGDAAKYGTVYSATLIVEADYFTAANLIIENSSPR PDGVRKGAQALAARFMGTKAAIYNCKFLGFQDTLCDDDGLHFYKDCFIQGTVDFIFGKGTSLYLNTQLDVAGDGGLAVITAHSREQEADTSGYSFVHCSI TGTGGKNTYLGRAWMPRSRVVFAYTTIADIIHPEGWNDMKHAGFDKTVMFGEYKCSGPGAVSTGRVAYGKQLTDVEVKPFLGLEYV |
Full Sequence |
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Protein Sequence Length: 318 Download |
AELDPALATA EENATVIKVM SDGTGNFKTV TEAIASVPAD NKKRVVIWIG VGVYKEKLKI 60 DRNKPFVTLY GSDPKNMPKL TFDGDAAKYG TVYSATLIVE ADYFTAANLI IENSSPRPDG 120 VRKGAQALAA RFMGTKAAIY NCKFLGFQDT LCDDDGLHFY KDCFIQGTVD FIFGKGTSLY 180 LNTQLDVAGD GGLAVITAHS REQEADTSGY SFVHCSITGT GGKNTYLGRA WMPRSRVVFA 240 YTTIADIIHP EGWNDMKHAG FDKTVMFGEY KCSGPGAVST GRVAYGKQLT DVEVKPFLGL 300 EYVQSEKWLL PPPSPQV* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02432 | PLN02432 | 2.0e-81 | 14 | 309 | 298 | + putative pectinesterase | ||
PLN02671 | PLN02671 | 1.0e-82 | 16 | 309 | 303 | + pectinesterase | ||
PLN02304 | PLN02304 | 9.0e-88 | 19 | 311 | 300 | + probable pectinesterase | ||
PLN02682 | PLN02682 | 1.0e-89 | 23 | 311 | 299 | + pectinesterase family protein | ||
PLN02665 | PLN02665 | 0 | 1 | 314 | 314 | + pectinesterase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAN78808.1 | 0 | 3 | 313 | 30 | 339 | hypothetical protein [Vitis vinifera] |
EMBL | CBI38547.1 | 0 | 3 | 313 | 55 | 363 | unnamed protein product [Vitis vinifera] |
EMBL | CBI38548.1 | 0 | 3 | 313 | 59 | 368 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002277202.1 | 0 | 3 | 313 | 56 | 364 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002277388.1 | 0 | 3 | 313 | 55 | 364 | PREDICTED: hypothetical protein [Vitis vinifera] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 4e-36 | 12 | 309 | 1 | 308 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 7e-35 | 19 | 309 | 7 | 304 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 1qjv_B | 5e-24 | 13 | 306 | 5 | 332 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
PDB | 1qjv_A | 5e-24 | 13 | 306 | 5 | 332 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
PDB | 2ntq_B | 5e-24 | 13 | 306 | 5 | 332 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
DY300112 | 273 | 3 | 275 | 0 |
DY300051 | 278 | 3 | 280 | 0 |
DY263772 | 299 | 3 | 299 | 0 |
DY275544 | 278 | 3 | 280 | 0 |
DY292191 | 288 | 3 | 289 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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