Basic Information | |
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Species | Cucumis sativus |
Cazyme ID | Cucsa.086760.1 |
Family | CE8 |
Protein Properties | Length: 306 Molecular Weight: 33351 Isoelectric Point: 7.0046 |
Chromosome | Chromosome/Scaffold: 00873 Start: 147399 End: 148658 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 18 | 292 | 0 |
KVMGDGTGDFKTITEAIASVPVNNKNRVVIWIGEGVYKEKLTIEKNKPFITLCGTPKNVPTLSFDGVASKYGTVYSATLIVEADYFVAANLIIENTSPRP NGRKEAQALAARFRGTKSAFYNCKFFGFQDTLCDDDGLHLYKDCFIQGTVDFVFGKGTSLYLGQFAVITAHSREQEADASGYSFVHCSITGNGKDTYLGR AWMPRSRVIFAYTSMIDIIHPEGWNDMKHAGFDKTVMFGEYKCSGPGAVSTGRVAYGKQLTEAEVKPYLSLEFVQ |
Full Sequence |
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Protein Sequence Length: 306 Download |
AELDPAVVAA EGNVTIVKVM GDGTGDFKTI TEAIASVPVN NKNRVVIWIG EGVYKEKLTI 60 EKNKPFITLC GTPKNVPTLS FDGVASKYGT VYSATLIVEA DYFVAANLII ENTSPRPNGR 120 KEAQALAARF RGTKSAFYNC KFFGFQDTLC DDDGLHLYKD CFIQGTVDFV FGKGTSLYLG 180 QFAVITAHSR EQEADASGYS FVHCSITGNG KDTYLGRAWM PRSRVIFAYT SMIDIIHPEG 240 WNDMKHAGFD KTVMFGEYKC SGPGAVSTGR VAYGKQLTEA EVKPYLSLEF VQSAKWLLPP 300 PNPQA* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02671 | PLN02671 | 9.0e-80 | 16 | 297 | 299 | + pectinesterase | ||
PLN02432 | PLN02432 | 1.0e-80 | 16 | 297 | 292 | + putative pectinesterase | ||
PLN02304 | PLN02304 | 7.0e-88 | 14 | 299 | 304 | + probable pectinesterase | ||
PLN02682 | PLN02682 | 5.0e-94 | 15 | 299 | 301 | + pectinesterase family protein | ||
PLN02665 | PLN02665 | 8.0e-179 | 1 | 302 | 312 | + pectinesterase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAN78808.1 | 0 | 3 | 301 | 30 | 339 | hypothetical protein [Vitis vinifera] |
EMBL | CBI38548.1 | 0 | 3 | 301 | 59 | 368 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002309337.1 | 0 | 3 | 302 | 58 | 368 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002321778.1 | 0 | 3 | 302 | 55 | 362 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002333446.1 | 0 | 3 | 302 | 55 | 365 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 4e-37 | 17 | 297 | 9 | 308 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 2e-36 | 19 | 297 | 7 | 304 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 1qjv_B | 8e-24 | 13 | 285 | 5 | 328 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
PDB | 1qjv_A | 8e-24 | 13 | 285 | 5 | 328 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
PDB | 2ntq_B | 9e-24 | 13 | 285 | 5 | 328 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
GR458538 | 278 | 29 | 298 | 0 |
EW737264 | 282 | 28 | 301 | 0 |
DY300112 | 271 | 3 | 263 | 0 |
DY300051 | 276 | 3 | 268 | 0 |
DY263772 | 279 | 3 | 271 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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