Basic Information | |
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Species | Cucumis sativus |
Cazyme ID | Cucsa.086770.1 |
Family | CE8 |
Protein Properties | Length: 351 Molecular Weight: 38303.6 Isoelectric Point: 6.3662 |
Chromosome | Chromosome/Scaffold: 00873 Start: 152382 End: 153734 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 54 | 337 | 0 |
KVMSDGTGDFKTVTEAIASVPVNNKNRVVIWIGEGVYKEKLTIEKNKPFITLCGTPKNVPTLTFDGVASKYGTVYSATLIVEADYFVAANLIIENTSPRP NGRKEAQALAARFRGTKSAFYNCKFLGFQDTLCDDDGLHLYKDCFIQGTVDFVFGKGTSLYLNTELNVVGEGQFAVITAHSREQEADASGYSFVHCSITG NGKDTFLGRAWMPRSRVIFAYTSMIDIIHPEGWNDMKHAGFDKTVMFGEYKCSGPGSVSTGRVAYGKQLTEAEVKPYLSLEFVQ |
Full Sequence |
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Protein Sequence Length: 351 Download |
TFTAILAVPS PMVPVDKAQL EAWFSENVKP FADRNKAELD PAVVAAEGNV TIVKVMSDGT 60 GDFKTVTEAI ASVPVNNKNR VVIWIGEGVY KEKLTIEKNK PFITLCGTPK NVPTLTFDGV 120 ASKYGTVYSA TLIVEADYFV AANLIIENTS PRPNGRKEAQ ALAARFRGTK SAFYNCKFLG 180 FQDTLCDDDG LHLYKDCFIQ GTVDFVFGKG TSLYLNTELN VVGEGQFAVI TAHSREQEAD 240 ASGYSFVHCS ITGNGKDTFL GRAWMPRSRV IFAYTSMIDI IHPEGWNDMK HAGFDKTVMF 300 GEYKCSGPGS VSTGRVAYGK QLTEAEVKPY LSLEFVQSAK WLLPPPNPQA * 360 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02773 | PLN02773 | 9.0e-81 | 52 | 343 | 308 | + pectinesterase | ||
PLN02432 | PLN02432 | 4.0e-84 | 52 | 342 | 293 | + putative pectinesterase | ||
PLN02304 | PLN02304 | 9.0e-90 | 50 | 344 | 304 | + probable pectinesterase | ||
PLN02682 | PLN02682 | 4.0e-94 | 51 | 344 | 302 | + pectinesterase family protein | ||
PLN02665 | PLN02665 | 0 | 3 | 347 | 354 | + pectinesterase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | XP_002309337.1 | 0 | 3 | 347 | 16 | 368 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002318197.1 | 0 | 2 | 347 | 11 | 364 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002321778.1 | 0 | 13 | 347 | 30 | 362 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002333446.1 | 0 | 2 | 347 | 12 | 365 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002511045.1 | 0 | 3 | 347 | 23 | 366 | Pectinesterase-1 precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 2e-39 | 53 | 342 | 9 | 308 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 6e-38 | 55 | 342 | 7 | 304 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntq_B | 2e-24 | 49 | 330 | 5 | 328 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntq_A | 2e-24 | 49 | 330 | 5 | 328 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntp_B | 2e-24 | 49 | 330 | 5 | 328 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
DY300112 | 298 | 12 | 308 | 0 |
DY300051 | 303 | 12 | 313 | 0 |
DY263772 | 306 | 12 | 316 | 0 |
DY275544 | 303 | 12 | 313 | 0 |
DY292191 | 315 | 12 | 322 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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