Basic Information | |
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Species | Cucumis sativus |
Cazyme ID | Cucsa.086780.1 |
Family | CE8 |
Protein Properties | Length: 320 Molecular Weight: 35308.8 Isoelectric Point: 6.0526 |
Chromosome | Chromosome/Scaffold: 00873 Start: 157910 End: 159735 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 18 | 302 | 0 |
KVRGDGSGDFKTITEAIESVPACNTKRVVIWIGGGVYKEKLKIDRNKPFVTLYGSPNNMPNLTFDGDASKYGTVYSATLTVEADYFTAANLIIENSSPRP DGKRKGEQALAARIWGNKVAIYNCKFIGFQDTLCDDRGLHLYKDCFIQGTVDFIFGGGTSLYLNTQLDVVVDGGLGVIAAHSREQESECSGFSFVHCSIT GTGGRNTYLGRAWRPRSRVVFAYTTMADIIHPKGWNDMDNFGYDKTVSFGEYKCSGLGSNFSKRVQYGKQLSDEKVQQFVSLEYL |
Full Sequence |
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Protein Sequence Length: 320 Download |
MKLDSELVAA EENATVIKVR GDGSGDFKTI TEAIESVPAC NTKRVVIWIG GGVYKEKLKI 60 DRNKPFVTLY GSPNNMPNLT FDGDASKYGT VYSATLTVEA DYFTAANLII ENSSPRPDGK 120 RKGEQALAAR IWGNKVAIYN CKFIGFQDTL CDDRGLHLYK DCFIQGTVDF IFGGGTSLYL 180 NTQLDVVVDG GLGVIAAHSR EQESECSGFS FVHCSITGTG GRNTYLGRAW RPRSRVVFAY 240 TTMADIIHPK GWNDMDNFGY DKTVSFGEYK CSGLGSNFSK RVQYGKQLSD EKVQQFVSLE 300 YLKSDTWLLP PPNHEDLEN* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02432 | PLN02432 | 1.0e-77 | 14 | 308 | 297 | + putative pectinesterase | ||
PLN02773 | PLN02773 | 6.0e-80 | 16 | 309 | 309 | + pectinesterase | ||
PLN02304 | PLN02304 | 4.0e-86 | 19 | 310 | 300 | + probable pectinesterase | ||
PLN02682 | PLN02682 | 2.0e-90 | 14 | 310 | 304 | + pectinesterase family protein | ||
PLN02665 | PLN02665 | 0 | 3 | 313 | 311 | + pectinesterase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAN78808.1 | 0 | 3 | 312 | 30 | 339 | hypothetical protein [Vitis vinifera] |
EMBL | CBI38547.1 | 0 | 3 | 312 | 55 | 363 | unnamed protein product [Vitis vinifera] |
EMBL | CBI38548.1 | 0 | 3 | 312 | 59 | 368 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002309337.1 | 0 | 3 | 313 | 58 | 368 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002333446.1 | 0 | 3 | 313 | 55 | 365 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1xg2_A | 2e-33 | 19 | 308 | 7 | 304 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 1gq8_A | 2e-33 | 12 | 308 | 1 | 308 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 2ntq_B | 5e-26 | 9 | 310 | 1 | 342 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 2ntq_A | 5e-26 | 9 | 310 | 1 | 342 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 2ntp_B | 5e-26 | 9 | 310 | 1 | 342 | A Chain A, Pectin Methylesterase From Carrot |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
DY300112 | 271 | 3 | 273 | 0 |
DY300051 | 277 | 3 | 279 | 0 |
DY275544 | 273 | 3 | 273 | 0 |
DY263772 | 280 | 3 | 282 | 0 |
DY292191 | 288 | 3 | 289 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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