| Basic Information | |
|---|---|
| Species | Cucumis sativus |
| Cazyme ID | Cucsa.093830.1 |
| Family | GH28 |
| Protein Properties | Length: 381 Molecular Weight: 41512.7 Isoelectric Point: 6.4259 |
| Chromosome | Chromosome/Scaffold: 00919 Start: 118558 End: 120458 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 38 | 365 | 0 |
| GATEESPTLHVPDGKTYLLNPLKFQGPCKSKQVIFDLGGTLMAPTKDEWISDGKGQWIQFFDIEGLNLQGGGRFDGQGSLWWKDCDHKHCKRPTALFFHN CNGLQMKGMKHINSAKNHISINMCDDVIFSHLHISAPEDSPNTDGIDISESTNIFIEDSFMATGDDCIAINNGSSNININGITCGPGHGISIGSLGKDGE YNVVENVHVSNCLLRSTQNGIRIKTWEGGYGYAKNITFEKITMKNAKNPIIIDQYYSSYAYSRKIKGMDIKVSDVTYREVNGTSANEDAITFNCSQARCS NIILDNVNIKMTNPGEKAKAVCQNADGK | |||
| Full Sequence |
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| Protein Sequence Length: 381 Download |
| SWTVLGSSDF NVLDYGAIGN GKTDDSKAFL KAWNDVCGAT EESPTLHVPD GKTYLLNPLK 60 FQGPCKSKQV IFDLGGTLMA PTKDEWISDG KGQWIQFFDI EGLNLQGGGR FDGQGSLWWK 120 DCDHKHCKRP TALFFHNCNG LQMKGMKHIN SAKNHISINM CDDVIFSHLH ISAPEDSPNT 180 DGIDISESTN IFIEDSFMAT GDDCIAINNG SSNININGIT CGPGHGISIG SLGKDGEYNV 240 VENVHVSNCL LRSTQNGIRI KTWEGGYGYA KNITFEKITM KNAKNPIIID QYYSSYAYSR 300 KIKGMDIKVS DVTYREVNGT SANEDAITFN CSQARCSNII LDNVNIKMTN PGEKAKAVCQ 360 NADGKVLSAV PPVSCLSKSH * 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02218 | PLN02218 | 3.0e-89 | 8 | 372 | 373 | + polygalacturonase ADPG | ||
| PLN02188 | PLN02188 | 9.0e-90 | 6 | 375 | 377 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN02793 | PLN02793 | 2.0e-96 | 10 | 379 | 377 | + Probable polygalacturonase | ||
| PLN03010 | PLN03010 | 8.0e-112 | 9 | 365 | 359 | + polygalacturonase | ||
| PLN03003 | PLN03003 | 1.0e-112 | 7 | 379 | 380 | + Probable polygalacturonase At3g15720 | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAY21049.1 | 0 | 1 | 377 | 18 | 397 | PGN [Glycine max] |
| GenBank | ABC75354.1 | 0 | 10 | 376 | 23 | 394 | Glycoside hydrolase, family 28 [Medicago truncatula] |
| GenBank | ABO81149.1 | 0 | 13 | 378 | 1 | 370 | Glycoside hydrolase, family 28 [Medicago truncatula] |
| RefSeq | XP_002324855.1 | 0 | 6 | 379 | 23 | 397 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002515526.1 | 0 | 8 | 379 | 26 | 395 | Polygalacturonase-2 precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2iq7_G | 4e-26 | 85 | 361 | 57 | 330 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_F | 4e-26 | 85 | 361 | 57 | 330 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_E | 4e-26 | 85 | 361 | 57 | 330 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_D | 4e-26 | 85 | 361 | 57 | 330 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_C | 4e-26 | 85 | 361 | 57 | 330 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| CV536748 | 259 | 76 | 331 | 0 |
| CX192293 | 250 | 48 | 297 | 0 |
| DY281549 | 319 | 10 | 324 | 0 |
| DY961682 | 265 | 7 | 263 | 0 |
| CV538127 | 233 | 37 | 266 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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