Basic Information | |
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Species | Cucumis sativus |
Cazyme ID | Cucsa.097920.1 |
Family | PL1 |
Protein Properties | Length: 439 Molecular Weight: 49637.4 Isoelectric Point: 9.8147 |
Chromosome | Chromosome/Scaffold: 00923 Start: 110073 End: 113423 |
Description | Pectate lyase family protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 137 | 339 | 0 |
RPLWIIFAHDMVIRLSEELIVTDDKTLDGRGANVHIANGGQITLQFVKNIIIHNLHIHDIKAGNGGMIRDSVSHYGFRTRSDGDGISMFGASRVWIDHVS MSNCQDGLIDAVMASTAITISNCHFTHHNDVILLGASNGYSNDQIMQVTLAFNHFGKGLVQRMPRCRWGFIHVVNNDYTHWLMYAIGGSHNPTIISQGNR FIA |
Full Sequence |
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Protein Sequence Length: 439 Download |
MIFPTLKANI ADFDEVWQKR AIEAQKASFE AYEPHPEEET NNFNKQVHRS LDGGNNTRRH 60 LRKYTGPCLA TNPIDRCWRC DRNWARNRKK LADCALGFGR RTTGGKDGKI YVVRDSSDND 120 LVNPKPGTLR HAVIQERPLW IIFAHDMVIR LSEELIVTDD KTLDGRGANV HIANGGQITL 180 QFVKNIIIHN LHIHDIKAGN GGMIRDSVSH YGFRTRSDGD GISMFGASRV WIDHVSMSNC 240 QDGLIDAVMA STAITISNCH FTHHNDVILL GASNGYSNDQ IMQVTLAFNH FGKGLVQRMP 300 RCRWGFIHVV NNDYTHWLMY AIGGSHNPTI ISQGNRFIAP PNPNCKEVTK RVYAPESEWR 360 SWNWRSEGDL MMNGAFFIQS GNPIKRYSKK DVIHSKPGTF VTRLTRFAGP LKSPIENPVL 420 RTWKKEQHNI KGKANLCT* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam04431 | Pec_lyase_N | 7.0e-18 | 9 | 61 | 54 | + Pectate lyase, N terminus. This region is found N terminal to the pectate lyase domain (pfam00544) in some plant pectate lyase enzymes. | ||
COG3866 | PelB | 1.0e-21 | 102 | 337 | 254 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 3.0e-56 | 161 | 337 | 185 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 2.0e-66 | 146 | 341 | 207 | + Amb_all domain. |
Gene Ontology | |
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GO Term | Description |
GO:0030570 | pectate lyase activity |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAN79927.1 | 0 | 1 | 418 | 19 | 438 | hypothetical protein [Vitis vinifera] |
EMBL | CBI22159.1 | 0 | 1 | 418 | 48 | 467 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002311599.1 | 0 | 4 | 411 | 10 | 421 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002330086.1 | 0 | 1 | 411 | 17 | 427 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002520133.1 | 0 | 1 | 418 | 19 | 439 | Pectate lyase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 72 | 409 | 2 | 343 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 72 | 409 | 2 | 343 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 1e-18 | 102 | 328 | 21 | 227 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1pcl_A | 0.0000000000002 | 153 | 354 | 74 | 303 | A Chain A, Unusual Structural Features In The Parallel Beta-Helix In Pectate Lyases |
PDB | 1vbl_A | 0.000000000008 | 155 | 337 | 128 | 330 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
HO778688 | 410 | 3 | 411 | 0 |
FG606120 | 359 | 34 | 392 | 0 |
CO103662 | 283 | 101 | 383 | 0 |
CK262438 | 299 | 83 | 381 | 0 |
EL465440 | 298 | 84 | 381 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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