Basic Information | |
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Species | Cucumis sativus |
Cazyme ID | Cucsa.099870.1 |
Family | GH28 |
Protein Properties | Length: 385 Molecular Weight: 41452.9 Isoelectric Point: 7.7744 |
Chromosome | Chromosome/Scaffold: 00926 Start: 540125 End: 545395 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 37 | 372 | 0 |
RMACDSAGVVTFLIPKGTYLVGPVIFSGPCKNVSSLTVKMEGYLKASTNLSKYGSGAGWIEFRWMEGLTLNGGGTFDGRGAEAWPFNNCRDDYNCKLLPT NLKFVALNNTVVQHITSLNSKFFHLALVQCKRFVGSELKISAPENSPNTDGIHIDRSSNIHFSLSHIQTGDDCISIGQGNSQVTISSVNCGPGHGISVGS LGRYRNEGDVSGLVVKNCSLTGTANGIRIKTWPNSPGSSSATNMTFENITMNNVSNPIIIDQSYCPFGFCSFKEPSLVKLSDIYFKNIRGTSSSKVAVAL ECSKGFPCQNVNLENVHLDLSSGENHPSSTCKYVRA |
Full Sequence |
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Protein Sequence Length: 385 Download |
MEKENLEKEK SVLMGTASNQ DNQDGALEIT AFLAAWRMAC DSAGVVTFLI PKGTYLVGPV 60 IFSGPCKNVS SLTVKMEGYL KASTNLSKYG SGAGWIEFRW MEGLTLNGGG TFDGRGAEAW 120 PFNNCRDDYN CKLLPTNLKF VALNNTVVQH ITSLNSKFFH LALVQCKRFV GSELKISAPE 180 NSPNTDGIHI DRSSNIHFSL SHIQTGDDCI SIGQGNSQVT ISSVNCGPGH GISVGSLGRY 240 RNEGDVSGLV VKNCSLTGTA NGIRIKTWPN SPGSSSATNM TFENITMNNV SNPIIIDQSY 300 CPFGFCSFKE PSLVKLSDIY FKNIRGTSSS KVAVALECSK GFPCQNVNLE NVHLDLSSGE 360 NHPSSTCKYV RARYIGTQIP PPCA* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03010 | PLN03010 | 2.0e-77 | 31 | 370 | 344 | + polygalacturonase | ||
PLN02218 | PLN02218 | 2.0e-84 | 24 | 354 | 337 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 1.0e-88 | 24 | 383 | 366 | + Probable polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 2.0e-106 | 40 | 370 | 331 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 0 | 31 | 384 | 354 | + polygalacturonase/glycoside hydrolase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAA16789.1 | 0 | 31 | 383 | 1 | 361 | polygalacturonase-like protein [Arabidopsis thaliana] |
EMBL | CBI37725.1 | 0 | 31 | 384 | 71 | 388 | unnamed protein product [Vitis vinifera] |
RefSeq | NP_193552.1 | 0 | 17 | 383 | 42 | 413 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | XP_002279959.1 | 0 | 31 | 384 | 71 | 420 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002312795.1 | 0 | 31 | 384 | 61 | 410 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 5e-19 | 108 | 354 | 115 | 361 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1nhc_F | 0.000000000000004 | 104 | 364 | 72 | 332 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 0.000000000000004 | 104 | 364 | 72 | 332 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 0.000000000000004 | 104 | 364 | 72 | 332 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 0.000000000000004 | 104 | 364 | 72 | 332 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
DR944704 | 228 | 156 | 383 | 0 |
DR933566 | 209 | 146 | 354 | 0 |
FL808112 | 258 | 49 | 306 | 0 |
DT736437 | 238 | 31 | 268 | 0 |
DR938457 | 224 | 160 | 383 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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