| Basic Information | |
|---|---|
| Species | Cucumis sativus |
| Cazyme ID | Cucsa.099870.2 |
| Family | GH28 |
| Protein Properties | Length: 348 Molecular Weight: 37331.3 Isoelectric Point: 8.205 |
| Chromosome | Chromosome/Scaffold: 00926 Start: 540125 End: 543282 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 2 | 335 | 0 |
| ACDSAGVVTFLIPKGTYLVGPVIFSGPCKNVSSLTVKMEGYLKASTNLSKYGSGAGWIEFRWMEGLTLNGGGTFDGRGAEAWPFNNCRDDYNCKLLPTNL KFVALNNTVVQHITSLNSKFFHLALVQCKRFVGSELKISAPENSPNTDGIHIDRSSNIHFSLSHIQTGDDCISIGQGNSQVTISSVNCGPGHGISVGSLG RYRNEGDVSGLVVKNCSLTGTANGIRIKTWPNSPGSSSATNMTFENITMNNVSNPIIIDQSYCPFGFCSFKEPSLVKLSDIYFKNIRGTSSSKVAVALEC SKGFPCQNVNLENVHLDLSSGENHPSSTCKYVRA | |||
| Full Sequence |
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| Protein Sequence Length: 348 Download |
| MACDSAGVVT FLIPKGTYLV GPVIFSGPCK NVSSLTVKME GYLKASTNLS KYGSGAGWIE 60 FRWMEGLTLN GGGTFDGRGA EAWPFNNCRD DYNCKLLPTN LKFVALNNTV VQHITSLNSK 120 FFHLALVQCK RFVGSELKIS APENSPNTDG IHIDRSSNIH FSLSHIQTGD DCISIGQGNS 180 QVTISSVNCG PGHGISVGSL GRYRNEGDVS GLVVKNCSLT GTANGIRIKT WPNSPGSSSA 240 TNMTFENITM NNVSNPIIID QSYCPFGFCS FKEPSLVKLS DIYFKNIRGT SSSKVAVALE 300 CSKGFPCQNV NLENVHLDLS SGENHPSSTC KYVRARYIGT QIPPPCA* 360 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN03010 | PLN03010 | 1.0e-73 | 10 | 333 | 327 | + polygalacturonase | ||
| PLN02218 | PLN02218 | 1.0e-80 | 2 | 317 | 321 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 4.0e-84 | 1 | 346 | 351 | + Probable polygalacturonase | ||
| pfam00295 | Glyco_hydro_28 | 6.0e-105 | 3 | 333 | 331 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02188 | PLN02188 | 0 | 2 | 347 | 346 | + polygalacturonase/glycoside hydrolase family protein | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAQ62998.1 | 0 | 6 | 346 | 59 | 398 | oil palm polygalacturonase allergen PEST459 [Elaeis guineensis] |
| EMBL | CAA16789.1 | 0 | 2 | 346 | 9 | 361 | polygalacturonase-like protein [Arabidopsis thaliana] |
| RefSeq | NP_193552.1 | 0 | 2 | 346 | 61 | 413 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | XP_002279959.1 | 0 | 2 | 347 | 79 | 420 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002312795.1 | 0 | 2 | 347 | 69 | 410 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 2e-19 | 71 | 317 | 115 | 361 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1nhc_F | 0.000000000000002 | 67 | 327 | 72 | 332 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 0.000000000000002 | 67 | 327 | 72 | 332 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_D | 0.000000000000002 | 67 | 327 | 72 | 332 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_C | 0.000000000000002 | 67 | 327 | 72 | 332 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| DR944704 | 228 | 119 | 346 | 0 |
| DR933566 | 209 | 109 | 317 | 0 |
| FL808112 | 259 | 12 | 270 | 0 |
| DT736437 | 230 | 2 | 231 | 0 |
| DR938457 | 224 | 123 | 346 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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