| Basic Information | |
|---|---|
| Species | Cucumis sativus |
| Cazyme ID | Cucsa.100520.1 |
| Family | GH28 |
| Protein Properties | Length: 399 Molecular Weight: 43402.5 Isoelectric Point: 9.9331 |
| Chromosome | Chromosome/Scaffold: 00926 Start: 956836 End: 958840 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 53 | 385 | 0 |
| KDACSSTKPSKIVIPGGRYVVDSMKFQGPCLAPIHVQVEGRLQAPTNIKKMRNDASWIVFQYINGLTLSGKGTFDGRGSLAWKQNQCASSGKCGSLPIYI YPSYSNYLQQSLRFYSLNNSLIKDITSTDSKFFHVNVHNCRNLTLQNINIDAPGDSPNTDGIHIGGSSGVTIHNARIKTGDDCVSIGDGSQQIKVEKVTC GPGHGISIGSLGKYKNEKPVSGITVRDCTITNTMFGVRIKSWPASTKGIASNMQFESIVMNNVGTPILIDQQYCPYGTCNRQIPSRVQISDVGFKNIRGT STTQVAVKLVCSRGYPCKNVKLSNINLKYSGTN | |||
| Full Sequence |
|---|
| Protein Sequence Length: 399 Download |
| MSSSTISRST TFILFLFIGL ITNAQAADFH VKRYGARANG NSDDSQAIMK AWKDACSSTK 60 PSKIVIPGGR YVVDSMKFQG PCLAPIHVQV EGRLQAPTNI KKMRNDASWI VFQYINGLTL 120 SGKGTFDGRG SLAWKQNQCA SSGKCGSLPI YIYPSYSNYL QQSLRFYSLN NSLIKDITST 180 DSKFFHVNVH NCRNLTLQNI NIDAPGDSPN TDGIHIGGSS GVTIHNARIK TGDDCVSIGD 240 GSQQIKVEKV TCGPGHGISI GSLGKYKNEK PVSGITVRDC TITNTMFGVR IKSWPASTKG 300 IASNMQFESI VMNNVGTPIL IDQQYCPYGT CNRQIPSRVQ ISDVGFKNIR GTSTTQVAVK 360 LVCSRGYPCK NVKLSNINLK YSGTNACHCW KRRATSLH* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02218 | PLN02218 | 2.0e-84 | 31 | 387 | 362 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 1.0e-85 | 29 | 396 | 375 | + Probable polygalacturonase | ||
| PLN02155 | PLN02155 | 4.0e-88 | 12 | 386 | 376 | + polygalacturonase | ||
| pfam00295 | Glyco_hydro_28 | 1.0e-111 | 56 | 386 | 331 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02188 | PLN02188 | 2.0e-141 | 29 | 385 | 358 | + polygalacturonase/glycoside hydrolase family protein | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CBI22050.1 | 0 | 29 | 383 | 28 | 369 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002274096.1 | 0 | 24 | 383 | 23 | 368 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002282563.1 | 0 | 29 | 386 | 28 | 372 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002282573.1 | 0 | 29 | 383 | 28 | 369 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002282594.1 | 0 | 29 | 383 | 28 | 369 | PREDICTED: hypothetical protein [Vitis vinifera] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1nhc_F | 3e-18 | 118 | 379 | 72 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 3e-18 | 118 | 379 | 72 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_D | 3e-18 | 118 | 379 | 72 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_C | 3e-18 | 118 | 379 | 72 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_B | 3e-18 | 118 | 379 | 72 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
