| Basic Information | |
|---|---|
| Species | Cucumis sativus |
| Cazyme ID | Cucsa.100530.1 |
| Family | GH28 |
| Protein Properties | Length: 374 Molecular Weight: 40505.8 Isoelectric Point: 8.7056 |
| Chromosome | Chromosome/Scaffold: 00926 Start: 962485 End: 964180 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 54 | 353 | 0 |
| NDACASVPPSAVIIPKGIFKVREGEFKGPCKSPIEMRVRGTLQALNHPQGDSWITFVYVDRMKLSGGVFDGQGKEGWRITSLDSKNSHVNILGCNNLTFQ GVNIIAPEDSPNTDEIHIGRSIRISILKSRIAIGDDCISLGNGSKRVKVTDVTCGPGHGISIGSLGKYTNEEPVEGVVVKNCTIMNTTNGVRIKTWSASP VAGIAIIMHFSDITMINVSNPILIDQEYCPWNQCNRQIPSKIKINKVSFKNIRGCSATSVAVKLICSSNLPCEEVKVANIDLVYNGTKGSITSQCMNVKP | |||
| Full Sequence |
|---|
| Protein Sequence Length: 374 Download |
| MIKYSSLSVT TFLMILLSFT IESRSHVDVI FHLRKYGNIV SGVDVTEALK DAWNDACASV 60 PPSAVIIPKG IFKVREGEFK GPCKSPIEMR VRGTLQALNH PQGDSWITFV YVDRMKLSGG 120 VFDGQGKEGW RITSLDSKNS HVNILGCNNL TFQGVNIIAP EDSPNTDEIH IGRSIRISIL 180 KSRIAIGDDC ISLGNGSKRV KVTDVTCGPG HGISIGSLGK YTNEEPVEGV VVKNCTIMNT 240 TNGVRIKTWS ASPVAGIAII MHFSDITMIN VSNPILIDQE YCPWNQCNRQ IPSKIKINKV 300 SFKNIRGCSA TSVAVKLICS SNLPCEEVKV ANIDLVYNGT KGSITSQCMN VKPILSGIQN 360 PSICSSPYTI ASK* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02218 | PLN02218 | 3.0e-56 | 44 | 361 | 356 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 2.0e-64 | 23 | 366 | 389 | + Probable polygalacturonase | ||
| PLN02155 | PLN02155 | 1.0e-72 | 8 | 364 | 392 | + polygalacturonase | ||
| pfam00295 | Glyco_hydro_28 | 8.0e-82 | 57 | 352 | 327 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02188 | PLN02188 | 9.0e-99 | 26 | 364 | 372 | + polygalacturonase/glycoside hydrolase family protein | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| DDBJ | BAA89476.1 | 0 | 7 | 364 | 3 | 393 | polygalacturonase [Salix gilgiana] |
| DDBJ | BAA89477.1 | 0 | 23 | 364 | 23 | 393 | polygalacturonase [Salix gilgiana] |
| DDBJ | BAA89478.1 | 0 | 44 | 364 | 41 | 393 | polygalacturonase [Salix gilgiana] |
| DDBJ | BAA89479.1 | 0 | 23 | 364 | 23 | 393 | polygalacturonase [Salix gilgiana] |
| RefSeq | XP_002329175.1 | 0 | 5 | 364 | 7 | 393 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2iq7_G | 0.0000000000002 | 109 | 351 | 102 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_F | 0.0000000000002 | 109 | 351 | 102 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_E | 0.0000000000002 | 109 | 351 | 102 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_D | 0.0000000000002 | 109 | 351 | 102 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_C | 0.0000000000002 | 109 | 351 | 102 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
