Basic Information | |
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Species | Cucumis sativus |
Cazyme ID | Cucsa.103830.1 |
Family | PL4 |
Protein Properties | Length: 638 Molecular Weight: 73456.1 Isoelectric Point: 6.5159 |
Chromosome | Chromosome/Scaffold: 00927 Start: 2535544 End: 2538862 |
Description | Rhamnogalacturonate lyase family protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL4 | 11 | 618 | 0 |
QNHGQVIIDNGIVRVTLSRPDGDVIALKYNGIDNLLEIRNVQSNRGYWDVVWNRPNKLCNFQHHTTNFKVITSNSDQVELSFAKTWDPSDPSSLPSNIDK RYILRRGDSGFYSYGIFERLNGWPQIEVDQIRIAYKLLGDKFHYMAISDNRQRMMPTAEDRLTGKPLDYPEAVLLTRPRDPSFRGEVDDKYQYSLENMEN KVHGWESSDPHVGFWMITPSDEFRTAGPVKQDLTSHVGPVTLSMFVSTHYAGKDVSMRFQEGEAWKKVFGPVFTYINSDPTGTGKPGSLWDDAKNQMRIE TSKWPYNFVESTEFPSSEQRGSLSGQLLVRDGFAKYPQMWGDSAYVGLAAPGELGSWQRESKGYQFWTRADDHGYFSIDNIRSGTYNLYAWVPGVLGDYK YDNQITITPRSSTNLNLLVFHPPRQGPTLWEIGIPDRKAAEFYIPSPRPTLTNCFYNDSKLHIQDDNFRQYGLWERYAELYPHGDLVYNVDTDDYHRNWF YAHVTRATGSGTYEATTWQIVFHIQRPKQIGNYMLRLALASSTDAVIDIRFNNPSTKQPHFTTGYWSSGKDNAIARHGIHGLHWLFNFQVPSQLLVEGQN VIYLTQRR |
Full Sequence |
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Protein Sequence Length: 638 Download |
MLSRDVTLEL QNHGQVIIDN GIVRVTLSRP DGDVIALKYN GIDNLLEIRN VQSNRGYWDV 60 VWNRPNKLCN FQHHTTNFKV ITSNSDQVEL SFAKTWDPSD PSSLPSNIDK RYILRRGDSG 120 FYSYGIFERL NGWPQIEVDQ IRIAYKLLGD KFHYMAISDN RQRMMPTAED RLTGKPLDYP 180 EAVLLTRPRD PSFRGEVDDK YQYSLENMEN KVHGWESSDP HVGFWMITPS DEFRTAGPVK 240 QDLTSHVGPV TLSMFVSTHY AGKDVSMRFQ EGEAWKKVFG PVFTYINSDP TGTGKPGSLW 300 DDAKNQMRIE TSKWPYNFVE STEFPSSEQR GSLSGQLLVR DGFAKYPQMW GDSAYVGLAA 360 PGELGSWQRE SKGYQFWTRA DDHGYFSIDN IRSGTYNLYA WVPGVLGDYK YDNQITITPR 420 SSTNLNLLVF HPPRQGPTLW EIGIPDRKAA EFYIPSPRPT LTNCFYNDSK LHIQDDNFRQ 480 YGLWERYAEL YPHGDLVYNV DTDDYHRNWF YAHVTRATGS GTYEATTWQI VFHIQRPKQI 540 GNYMLRLALA SSTDAVIDIR FNNPSTKQPH FTTGYWSSGK DNAIARHGIH GLHWLFNFQV 600 PSQLLVEGQN VIYLTQRRHT GEFQGVMYDY IRFEDVE* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
cd10316 | RGL4_M | 1.0e-32 | 329 | 426 | 98 | + Middle domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle domain represented by this model and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
cd10317 | RGL4_C | 4.0e-36 | 440 | 634 | 197 | + C-terminal domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
cd10320 | RGL4_N | 2.0e-66 | 15 | 299 | 292 | + N-terminal catalytic domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold; the middle and C-terminal domains are both putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
pfam06045 | Rhamnogal_lyase | 2.0e-80 | 13 | 197 | 188 | + Rhamnogalacturonate lyase family. Rhamnogalacturonate lyase (EC:4.2.2.-) degrades the rhamnogalacturonan I (RG-I) backbone of pectin. This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | XP_002285626.1 | 0 | 18 | 634 | 1 | 613 | PREDICTED: hypothetical protein isoform 1 [Vitis vinifera] |
RefSeq | XP_002308510.1 | 0 | 6 | 634 | 47 | 669 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002319997.1 | 0 | 16 | 634 | 1 | 615 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002527229.1 | 0 | 11 | 634 | 49 | 665 | lyase, putative [Ricinus communis] |
RefSeq | XP_002527245.1 | 0 | 16 | 634 | 2 | 616 | lyase, putative [Ricinus communis] |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
DY969340 | 329 | 225 | 552 | 0 |
GW864372 | 312 | 143 | 452 | 0 |
JG640880 | 273 | 151 | 422 | 0 |
DT552229 | 293 | 18 | 303 | 0 |
EL450442 | 282 | 110 | 390 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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