| Basic Information | |
|---|---|
| Species | Cucumis sativus |
| Cazyme ID | Cucsa.105310.1 |
| Family | GH28 |
| Protein Properties | Length: 443 Molecular Weight: 48203.5 Isoelectric Point: 9.2243 |
| Chromosome | Chromosome/Scaffold: 00929 Start: 43677 End: 47970 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 77 | 408 | 0 |
| MACSFPTRVRIVFPASNTFLVHPLELHGPCRSRVTLRIHGIINAPKDPNAWAGLNPRKWLYFRGVNHLTLEGGGEINGMGYEWWMSSCKINSTNPCRHAP TAITFHKCKNLKIHHLLVIDSQQMHVALTSCLRVVASNLKVIAPAFSPNTDGIHISASKGVMVKNSIISTGDDCVSIVGNSSRILIKDITCGPGHGISIG SLGKRNTSAQVRNVRVDGAVLSNTKNGARIKTWQGGSGSATDIIFKNMLMKNVSNPIIIDQYYCDSNRPCANQTSAVKVEDISFIHIKGTTATNKAIKFA CSDTSPCVGLYLEDILLLSEDAKISTSSCWQA | |||
| Full Sequence |
|---|
| Protein Sequence Length: 443 Download |
| MKGQRLWPSS LPIFLFTVLT SLTFECSADF DSLLQLPLSR LNITRPRSKG VFYLGDFGAK 60 GDGISNDTQA LMEAWKMACS FPTRVRIVFP ASNTFLVHPL ELHGPCRSRV TLRIHGIINA 120 PKDPNAWAGL NPRKWLYFRG VNHLTLEGGG EINGMGYEWW MSSCKINSTN PCRHAPTAIT 180 FHKCKNLKIH HLLVIDSQQM HVALTSCLRV VASNLKVIAP AFSPNTDGIH ISASKGVMVK 240 NSIISTGDDC VSIVGNSSRI LIKDITCGPG HGISIGSLGK RNTSAQVRNV RVDGAVLSNT 300 KNGARIKTWQ GGSGSATDII FKNMLMKNVS NPIIIDQYYC DSNRPCANQT SAVKVEDISF 360 IHIKGTTATN KAIKFACSDT SPCVGLYLED ILLLSEDAKI STSSCWQAYG LSSGPVYPPS 420 CFLGNENFIQ QKVQPAPTSH SF* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02155 | PLN02155 | 3.0e-89 | 51 | 422 | 373 | + polygalacturonase | ||
| PLN02188 | PLN02188 | 5.0e-94 | 42 | 421 | 384 | + polygalacturonase/glycoside hydrolase family protein | ||
| pfam00295 | Glyco_hydro_28 | 2.0e-101 | 79 | 405 | 327 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02218 | PLN02218 | 8.0e-120 | 47 | 418 | 374 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 0 | 1 | 442 | 443 | + Probable polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABD28401.1 | 0 | 27 | 441 | 32 | 450 | Glycoside hydrolase, family 28 [Medicago truncatula] |
| GenBank | ABM67700.1 | 0 | 9 | 442 | 10 | 442 | polygalacturonase [Citrus sinensis] |
| RefSeq | NP_565232.1 | 0 | 30 | 439 | 31 | 441 | polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] |
| RefSeq | XP_002299601.1 | 0 | 18 | 433 | 18 | 439 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002517603.1 | 0 | 24 | 434 | 5 | 417 | Polygalacturonase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 3e-23 | 147 | 407 | 122 | 368 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1nhc_F | 2e-18 | 144 | 381 | 72 | 307 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 2e-18 | 144 | 381 | 72 | 307 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_D | 2e-18 | 144 | 381 | 72 | 307 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_C | 2e-18 | 144 | 381 | 72 | 307 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
