Basic Information | |
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Species | Cucumis sativus |
Cazyme ID | Cucsa.105310.2 |
Family | GH28 |
Protein Properties | Length: 385 Molecular Weight: 41887.4 Isoelectric Point: 9.1428 |
Chromosome | Chromosome/Scaffold: 00929 Start: 43535 End: 47970 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 19 | 350 | 0 |
MACSFPTRVRIVFPASNTFLVHPLELHGPCRSRVTLRIHGIINAPKDPNAWAGLNPRKWLYFRGVNHLTLEGGGEINGMGYEWWMSSCKINSTNPCRHAP TAITFHKCKNLKIHHLLVIDSQQMHVALTSCLRVVASNLKVIAPAFSPNTDGIHISASKGVMVKNSIISTGDDCVSIVGNSSRILIKDITCGPGHGISIG SLGKRNTSAQVRNVRVDGAVLSNTKNGARIKTWQGGSGSATDIIFKNMLMKNVSNPIIIDQYYCDSNRPCANQTSAVKVEDISFIHIKGTTATNKAIKFA CSDTSPCVGLYLEDILLLSEDAKISTSSCWQA |
Full Sequence |
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Protein Sequence Length: 385 Download |
MCKDSLCKFF MALMEAWKMA CSFPTRVRIV FPASNTFLVH PLELHGPCRS RVTLRIHGII 60 NAPKDPNAWA GLNPRKWLYF RGVNHLTLEG GGEINGMGYE WWMSSCKINS TNPCRHAPTA 120 ITFHKCKNLK IHHLLVIDSQ QMHVALTSCL RVVASNLKVI APAFSPNTDG IHISASKGVM 180 VKNSIISTGD DCVSIVGNSS RILIKDITCG PGHGISIGSL GKRNTSAQVR NVRVDGAVLS 240 NTKNGARIKT WQGGSGSATD IIFKNMLMKN VSNPIIIDQY YCDSNRPCAN QTSAVKVEDI 300 SFIHIKGTTA TNKAIKFACS DTSPCVGLYL EDILLLSEDA KISTSSCWQA YGLSSGPVYP 360 PSCFLGNENF IQQKVQPAPT SHSF* |
Functional Domains Download unfiltered results here | ||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description |
PLN02155 | PLN02155 | 3.0e-83 | 12 | 364 | 354 | + polygalacturonase |
PLN02188 | PLN02188 | 2.0e-87 | 12 | 363 | 356 | + polygalacturonase/glycoside hydrolase family protein |
pfam00295 | Glyco_hydro_28 | 4.0e-101 | 21 | 347 | 327 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. |
PLN02218 | PLN02218 | 2.0e-110 | 12 | 360 | 351 | + polygalacturonase ADPG |
PLN02793 | PLN02793 | 0 | 12 | 384 | 373 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABD28401.1 | 0 | 11 | 383 | 76 | 450 | Glycoside hydrolase, family 28 [Medicago truncatula] |
GenBank | ABM67700.1 | 0 | 12 | 384 | 73 | 442 | polygalacturonase [Citrus sinensis] |
RefSeq | NP_565232.1 | 0 | 12 | 381 | 71 | 441 | polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] |
RefSeq | XP_002299601.1 | 0 | 7 | 375 | 71 | 439 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002517603.1 | 0 | 11 | 376 | 52 | 417 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 1e-23 | 89 | 349 | 122 | 368 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1nhc_F | 1e-18 | 86 | 323 | 72 | 307 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 1e-18 | 86 | 323 | 72 | 307 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 1e-18 | 86 | 323 | 72 | 307 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 1e-18 | 86 | 323 | 72 | 307 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
DV145325 | 245 | 134 | 378 | 0 |
CO979919 | 263 | 125 | 385 | 0 |
GO374209 | 367 | 20 | 374 | 0 |
EC954904 | 245 | 12 | 256 | 0 |
EY133898 | 234 | 97 | 330 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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