y
Basic Information | |
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Species | Cucumis sativus |
Cazyme ID | Cucsa.105310.3 |
Family | GH28 |
Protein Properties | Length: 372 Molecular Weight: 40368.5 Isoelectric Point: 9.2293 |
Chromosome | Chromosome/Scaffold: 00929 Start: 43535 End: 47970 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 6 | 337 | 0 |
MACSFPTRVRIVFPASNTFLVHPLELHGPCRSRVTLRIHGIINAPKDPNAWAGLNPRKWLYFRGVNHLTLEGGGEINGMGYEWWMSSCKINSTNPCRHAP TAITFHKCKNLKIHHLLVIDSQQMHVALTSCLRVVASNLKVIAPAFSPNTDGIHISASKGVMVKNSIISTGDDCVSIVGNSSRILIKDITCGPGHGISIG SLGKRNTSAQVRNVRVDGAVLSNTKNGARIKTWQGGSGSATDIIFKNMLMKNVSNPIIIDQYYCDSNRPCANQTSAVKVEDISFIHIKGTTATNKAIKFA CSDTSPCVGLYLEDILLLSEDAKISTSSCWQA |
Full Sequence |
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Protein Sequence Length: 372 Download |
MEAWKMACSF PTRVRIVFPA SNTFLVHPLE LHGPCRSRVT LRIHGIINAP KDPNAWAGLN 60 PRKWLYFRGV NHLTLEGGGE INGMGYEWWM SSCKINSTNP CRHAPTAITF HKCKNLKIHH 120 LLVIDSQQMH VALTSCLRVV ASNLKVIAPA FSPNTDGIHI SASKGVMVKN SIISTGDDCV 180 SIVGNSSRIL IKDITCGPGH GISIGSLGKR NTSAQVRNVR VDGAVLSNTK NGARIKTWQG 240 GSGSATDIIF KNMLMKNVSN PIIIDQYYCD SNRPCANQTS AVKVEDISFI HIKGTTATNK 300 AIKFACSDTS PCVGLYLEDI LLLSEDAKIS TSSCWQAYGL SSGPVYPPSC FLGNENFIQQ 360 KVQPAPTSHS F* 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02155 | PLN02155 | 2.0e-82 | 1 | 351 | 352 | + polygalacturonase | ||
PLN02188 | PLN02188 | 3.0e-86 | 1 | 350 | 354 | + polygalacturonase/glycoside hydrolase family protein | ||
pfam00295 | Glyco_hydro_28 | 2.0e-100 | 8 | 334 | 327 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 1.0e-109 | 3 | 347 | 347 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 0 | 2 | 371 | 370 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABD28401.1 | 0 | 1 | 370 | 79 | 450 | Glycoside hydrolase, family 28 [Medicago truncatula] |
GenBank | ABM67700.1 | 0 | 3 | 371 | 77 | 442 | polygalacturonase [Citrus sinensis] |
RefSeq | NP_565232.1 | 0 | 2 | 368 | 74 | 441 | polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] |
RefSeq | XP_002299601.1 | 0 | 2 | 362 | 79 | 439 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002517603.1 | 0 | 2 | 363 | 56 | 417 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 1e-23 | 76 | 336 | 122 | 368 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1nhc_F | 1e-18 | 73 | 310 | 72 | 307 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 1e-18 | 73 | 310 | 72 | 307 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 1e-18 | 73 | 310 | 72 | 307 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 1e-18 | 73 | 310 | 72 | 307 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
DV145325 | 245 | 121 | 365 | 0 |
CO979919 | 263 | 112 | 372 | 0 |
GO374209 | 368 | 7 | 362 | 0 |
EY133898 | 234 | 84 | 317 | 0 |
EC954904 | 241 | 3 | 243 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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