| Basic Information | |
|---|---|
| Species | Cucumis sativus |
| Cazyme ID | Cucsa.112490.1 |
| Family | PL1 |
| Protein Properties | Length: 330 Molecular Weight: 37054.1 Isoelectric Point: 10.1329 |
| Chromosome | Chromosome/Scaffold: 00953 Start: 1050329 End: 1051508 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| PL1 | 72 | 271 | 0 |
| WITFKKDMHIVLQKPLLVSSFTAIDGRGSTVHITGNACLMVVRATNIIIHGLIIHHCKSQAAGQVMGPNAKVISLGNVDGDAIRLVTASKVWIDHNTLYR CEDGLLDVTRGSTDITISNNWFRDQDKVILLGHDDGYVRDRSMRVTVLYNHFGPNCNQRMPRIRYGYAHVANNLYQGWTQYAIGGSMNPSVKSEANLFIA | |||
| Full Sequence |
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| Protein Sequence Length: 330 Download |
| MNAIDRCWRS NPYWRKNRQQ LATCSVGFAG KMTNNMGRNL MHYQVTDPSD DPINPRPGTL 60 RYGATMIKHK VWITFKKDMH IVLQKPLLVS SFTAIDGRGS TVHITGNACL MVVRATNIII 120 HGLIIHHCKS QAAGQVMGPN AKVISLGNVD GDAIRLVTAS KVWIDHNTLY RCEDGLLDVT 180 RGSTDITISN NWFRDQDKVI LLGHDDGYVR DRSMRVTVLY NHFGPNCNQR MPRIRYGYAH 240 VANNLYQGWT QYAIGGSMNP SVKSEANLFI ASKSKQVIWS TGKVEEAKWK FHSVRDAFEN 300 GASFAEIGVG KGRVKPNYNP QQRFPVADAX |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam13229 | Beta_helix | 0.004 | 113 | 210 | 101 | + Right handed beta helix region. This region contains a parallel beta helix region that shares some similarity with Pectate lyases. | ||
| COG3866 | PelB | 3.0e-25 | 89 | 281 | 205 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| pfam00544 | Pec_lyase_C | 4.0e-54 | 91 | 269 | 187 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| smart00656 | Amb_all | 9.0e-64 | 78 | 273 | 207 | + Amb_all domain. | ||
| Annotations - NR Download unfiltered results here | |||||||
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| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CBI26401.1 | 0 | 32 | 329 | 1 | 299 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002267384.1 | 0 | 1 | 329 | 19 | 348 | PREDICTED: similar to putative Cup s 1 pollen allergen [Vitis vinifera] |
| RefSeq | XP_002299118.1 | 0 | 1 | 329 | 1 | 333 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002304865.1 | 0 | 1 | 329 | 1 | 331 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002527354.1 | 0 | 1 | 273 | 29 | 301 | Major pollen allergen Jun v 1 precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
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| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 0 | 2 | 329 | 2 | 332 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 0 | 2 | 329 | 2 | 332 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1vbl_A | 2e-16 | 87 | 284 | 128 | 358 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
| PDB | 3zsc_A | 0.000000000000003 | 150 | 271 | 115 | 248 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 1pcl_A | 0.00000000000001 | 87 | 277 | 76 | 284 | A Chain A, Unusual Structural Features In The Parallel Beta-Helix In Pectate Lyases |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| DR808308 | 255 | 2 | 249 | 0 |
| DT575750 | 209 | 123 | 329 | 0 |
| FD757999 | 223 | 85 | 305 | 0 |
| HO778688 | 313 | 2 | 308 | 0 |
| DY362293 | 270 | 2 | 270 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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