| Basic Information | |
|---|---|
| Species | Cucumis sativus |
| Cazyme ID | Cucsa.114180.1 |
| Family | GH28 |
| Protein Properties | Length: 411 Molecular Weight: 44256 Isoelectric Point: 8.1606 |
| Chromosome | Chromosome/Scaffold: 00962 Start: 47922 End: 51140 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 58 | 385 | 0 |
| THACSSSKAATIYVPKAKFYISSATFNGPCKNNAITLKMDGTLVAPSNFQLTAQSKNWILFRQVNGVTVSGGVIDGQGSGLWACKQSGKTCPRGTTSLEF TNSQNILISGLTSLNSQIYHIVMNKCRNVKMESLNIYAPANSPNTDGIDLEETTYATILDSNIGTGDDCISLGHGTFNVFIQNVFCGPGHGISVGSLGRK EKENGVQNVTVQSCRLSNTQNGVRIKSWGRPSTGFGRDIRFQHITMTNVKYPIIIDQNYCPHHQDCPGQDSGVKISDVTYQSIYGTSATLVAIKMDCSPK FPCKGIVLDDVKLTYKNGKAKASCSHAQ | |||
| Full Sequence |
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| Protein Sequence Length: 411 Download |
| MFFSLTAFAD TLTFNILNCG AKPDGSIAAS LTFNVVDYGA KPDNTKFDSA KAFQSAWTHA 60 CSSSKAATIY VPKAKFYISS ATFNGPCKNN AITLKMDGTL VAPSNFQLTA QSKNWILFRQ 120 VNGVTVSGGV IDGQGSGLWA CKQSGKTCPR GTTSLEFTNS QNILISGLTS LNSQIYHIVM 180 NKCRNVKMES LNIYAPANSP NTDGIDLEET TYATILDSNI GTGDDCISLG HGTFNVFIQN 240 VFCGPGHGIS VGSLGRKEKE NGVQNVTVQS CRLSNTQNGV RIKSWGRPST GFGRDIRFQH 300 ITMTNVKYPI IIDQNYCPHH QDCPGQDSGV KISDVTYQSI YGTSATLVAI KMDCSPKFPC 360 KGIVLDDVKL TYKNGKAKAS CSHAQGFDVD LVEPTGCFYS RATEEFLSSI * 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02793 | PLN02793 | 5.0e-90 | 33 | 403 | 379 | + Probable polygalacturonase | ||
| PLN02218 | PLN02218 | 5.0e-90 | 26 | 394 | 376 | + polygalacturonase ADPG | ||
| pfam00295 | Glyco_hydro_28 | 1.0e-91 | 61 | 384 | 329 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02188 | PLN02188 | 4.0e-106 | 1 | 385 | 391 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN02155 | PLN02155 | 6.0e-129 | 24 | 398 | 376 | + polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAC26511.1 | 0 | 1 | 410 | 20 | 423 | polygalacturonase precursor [Cucumis melo] |
| DDBJ | BAC22689.1 | 0 | 28 | 398 | 29 | 398 | polygalacturonase [Pyrus communis] |
| DDBJ | BAF42034.1 | 0 | 28 | 398 | 29 | 398 | polygalacturonase3 [Pyrus communis] |
| EMBL | CAH18935.1 | 0 | 28 | 398 | 29 | 398 | polygalacturonase [Pyrus communis] |
| RefSeq | XP_002529091.1 | 0 | 26 | 398 | 21 | 392 | Polygalacturonase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1ib4_B | 2e-20 | 127 | 383 | 80 | 332 | A Chain A, Solution Structure Of The C-Terminal Domain Ole E 9 |
| PDB | 1ib4_A | 2e-20 | 127 | 383 | 80 | 332 | A Chain A, Solution Structure Of The C-Terminal Domain Ole E 9 |
| PDB | 1ia5_A | 2e-20 | 127 | 383 | 80 | 332 | A Chain A, Polygalacturonase From Aspergillus Aculeatus |
| PDB | 1bhe_A | 3e-20 | 129 | 371 | 117 | 362 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 2iq7_G | 2e-18 | 73 | 346 | 13 | 295 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| DY281549 | 322 | 26 | 346 | 0 |
| JZ191937 | 299 | 100 | 398 | 0 |
| JZ192826 | 286 | 98 | 383 | 0 |
| JZ194028 | 288 | 94 | 381 | 0 |
| JZ193571 | 294 | 25 | 318 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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