y
Basic Information | |
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Species | Cucumis sativus |
Cazyme ID | Cucsa.124080.1 |
Family | GH28 |
Protein Properties | Length: 420 Molecular Weight: 43838.1 Isoelectric Point: 6.6023 |
Chromosome | Chromosome/Scaffold: 01001 Start: 147039 End: 148634 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 66 | 396 | 0 |
WKEACASTTPSKVLIPKGSYGLSQSNLKGPCKSPIELQIEGTLQAPAHPEGEGLLILENTDLLTVSGTGVLDGQGKAGWEKNDCHLKKECTKLPMNLKLN FITNSIVTGITSLDSKNFHINLLGCKNLTFDHVTITAPGNSPNTDGIHVSSSEQINILNTNIATGDDCISVGDSNKQVAISDVTCGPGHGISIGSLGKYT KEKEVVGVTVKKCKLTGTTNGVRIKTWPDSAVAFPATDMHFEDIEMDNVSNPIIIDQEYCPWNQCNRKVASKIKISNVSFKNIRGTSATAIAVKIVCSKS IPCEGVEIADIDLTYSGPEGPIKSQCANVKP |
Full Sequence |
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Protein Sequence Length: 420 Download |
MGLISNVVAL LPLLLLLVSN SKAQPAAAQP SAQPAQPAGG AGGVFDITKY GAKPNADITA 60 ALTSAWKEAC ASTTPSKVLI PKGSYGLSQS NLKGPCKSPI ELQIEGTLQA PAHPEGEGLL 120 ILENTDLLTV SGTGVLDGQG KAGWEKNDCH LKKECTKLPM NLKLNFITNS IVTGITSLDS 180 KNFHINLLGC KNLTFDHVTI TAPGNSPNTD GIHVSSSEQI NILNTNIATG DDCISVGDSN 240 KQVAISDVTC GPGHGISIGS LGKYTKEKEV VGVTVKKCKL TGTTNGVRIK TWPDSAVAFP 300 ATDMHFEDIE MDNVSNPIII DQEYCPWNQC NRKVASKIKI SNVSFKNIRG TSATAIAVKI 360 VCSKSIPCEG VEIADIDLTY SGPEGPIKSQ CANVKPVITG KQNPPICGEV APADGPSTD* 420 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 3.0e-74 | 47 | 404 | 369 | + polygalacturonase ADPG | ||
PLN02155 | PLN02155 | 5.0e-75 | 44 | 407 | 370 | + polygalacturonase | ||
PLN02793 | PLN02793 | 2.0e-79 | 44 | 407 | 376 | + Probable polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 6.0e-108 | 70 | 395 | 328 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 4.0e-116 | 45 | 407 | 369 | + polygalacturonase/glycoside hydrolase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PIR | 0 | 43 | 407 | 14 | 377 | UP10_LACSN Unknown protein 10 from 2D-PAGE | |
DDBJ | BAA89476.1 | 0 | 1 | 407 | 1 | 393 | polygalacturonase [Salix gilgiana] |
DDBJ | BAA89477.1 | 0 | 17 | 407 | 10 | 393 | polygalacturonase [Salix gilgiana] |
DDBJ | BAA89478.1 | 0 | 17 | 407 | 10 | 393 | polygalacturonase [Salix gilgiana] |
RefSeq | XP_002329175.1 | 0 | 1 | 407 | 1 | 393 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 3e-22 | 130 | 348 | 113 | 333 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1rmg_A | 0.00000000000002 | 40 | 376 | 16 | 336 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
PDB | 2iq7_G | 0.0000000000003 | 67 | 324 | 15 | 266 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 0.0000000000003 | 67 | 324 | 15 | 266 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_E | 0.0000000000003 | 67 | 324 | 15 | 266 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |