Basic Information | |
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Species | Cucumis sativus |
Cazyme ID | Cucsa.124770.1 |
Family | PL1 |
Protein Properties | Length: 463 Molecular Weight: 51227.7 Isoelectric Point: 6.9593 |
Chromosome | Chromosome/Scaffold: 01001 Start: 597510 End: 600048 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 164 | 362 | 0 |
IVFPANMLIKLSQELIFNSYKTLDGRGANVHIVGGGCITLQYISNVIIHNIHIHHCHPSGNTMVRSSPTHYGYRTKSDGDGISIFGSKDIWIDHCSLSHC KDGLIDAVMGSTGITISNNYFSHHDEVMLLGHSDNYWPDSGMQVTIAFNHFGEKLVQRMPRCRLGYIHVVNNDFTQWEMYAIGGSGNPTINSQGNRYTA |
Full Sequence |
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Protein Sequence Length: 463 Download |
MLATTCIVLL ALLLPSRLPL RAAATTSAAL NLTLPGQHPS PELVAQEVHR ISCIRCTKSK 60 FRIRVFFVTM FLVCSSFFLD LLCEKDESSS CYTGNPIDDC WKCDRNWPNN RQRLADCAIG 120 FGQYALGGKN GEFYIVTDDS DDDAVNPKPG TLRYAVIQPQ PLWIVFPANM LIKLSQELIF 180 NSYKTLDGRG ANVHIVGGGC ITLQYISNVI IHNIHIHHCH PSGNTMVRSS PTHYGYRTKS 240 DGDGISIFGS KDIWIDHCSL SHCKDGLIDA VMGSTGITIS NNYFSHHDEV MLLGHSDNYW 300 PDSGMQVTIA FNHFGEKLVQ RMPRCRLGYI HVVNNDFTQW EMYAIGGSGN PTINSQGNRY 360 TAPYDRNAKE VTKRVETSES EWRGWNWRSE GDILVNGAFF VTSGQGLEVK YEKAYSVEPK 420 SAALIDQLTW HAGPLGVGGR DNNLGMWTTG PNGNGGGFGL GSX |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3866 | PelB | 7.0e-24 | 182 | 358 | 189 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 5.0e-60 | 176 | 360 | 208 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 8.0e-68 | 169 | 363 | 206 | + Amb_all domain. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAM61400.1 | 0 | 1 | 462 | 1 | 438 | pectate lyase-like protein [Arabidopsis thaliana] |
EMBL | CAB64222.1 | 0 | 38 | 462 | 15 | 419 | pectate lyase-like protein [Arabidopsis thaliana] |
RefSeq | NP_566979.1 | 0 | 1 | 462 | 2 | 439 | pectate lyase family protein [Arabidopsis thaliana] |
RefSeq | XP_002265853.1 | 0 | 1 | 449 | 115 | 537 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002519460.1 | 0 | 28 | 461 | 22 | 436 | Pectate lyase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 95 | 433 | 2 | 343 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 95 | 433 | 2 | 343 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 3e-18 | 164 | 360 | 50 | 246 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1pe9_B | 0.000000000000001 | 185 | 433 | 90 | 357 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1pe9_A | 0.000000000000001 | 185 | 433 | 90 | 357 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |