y
Basic Information | |
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Species | Cucumis sativus |
Cazyme ID | Cucsa.127930.1 |
Family | GH28 |
Protein Properties | Length: 394 Molecular Weight: 43028.1 Isoelectric Point: 8.6256 |
Chromosome | Chromosome/Scaffold: 01024 Start: 76755 End: 82176 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 44 | 380 | 0 |
DACSSTNAIFLVPCDRVYHLKPITFTGPCNSPLLFKIEGTIKASPHISDYEKDRRHWIIFQNLLGLRVEGKGIINGNGRKWWLNSCKVNKTLPCKEAPTA VTFFQCTNLRVEGLRFRNAQQMHLSFQKCNNVKALNLWIHSPGNSPNTDGIHVTGTQFIVIKNCLIMTGDDCLSIVSGSKNVRAKGITCGPGHGISIGSL GAGKTEAEVSNVVVDTAKFSGTTNGVRIKTWQGGKGYAQNIIFQNIVMDNVTNPIIIDQNYCDQKEPCTQQADAVEVSNVVYQNIRGTSASEVAVKFNCS KSIPCQGILLQDINLVHKGKNDDKSAQAEASCKNVKL |
Full Sequence |
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Protein Sequence Length: 394 Download |
MLRTRLEKMA SSPLASPEIF NVDDYGAMGD GEDDSEAFKE TWKDACSSTN AIFLVPCDRV 60 YHLKPITFTG PCNSPLLFKI EGTIKASPHI SDYEKDRRHW IIFQNLLGLR VEGKGIINGN 120 GRKWWLNSCK VNKTLPCKEA PTAVTFFQCT NLRVEGLRFR NAQQMHLSFQ KCNNVKALNL 180 WIHSPGNSPN TDGIHVTGTQ FIVIKNCLIM TGDDCLSIVS GSKNVRAKGI TCGPGHGISI 240 GSLGAGKTEA EVSNVVVDTA KFSGTTNGVR IKTWQGGKGY AQNIIFQNIV MDNVTNPIII 300 DQNYCDQKEP CTQQADAVEV SNVVYQNIRG TSASEVAVKF NCSKSIPCQG ILLQDINLVH 360 KGKNDDKSAQ AEASCKNVKL KNRGRVSPLC GGR* 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03003 | PLN03003 | 1.0e-97 | 14 | 379 | 371 | + Probable polygalacturonase At3g15720 | ||
PLN02188 | PLN02188 | 4.0e-103 | 15 | 388 | 378 | + polygalacturonase/glycoside hydrolase family protein | ||
pfam00295 | Glyco_hydro_28 | 6.0e-113 | 46 | 381 | 337 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02793 | PLN02793 | 7.0e-139 | 10 | 364 | 360 | + Probable polygalacturonase | ||
PLN02218 | PLN02218 | 1.0e-146 | 4 | 390 | 391 | + polygalacturonase ADPG |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAC26512.1 | 0 | 1 | 392 | 69 | 460 | polygalacturonase precursor [Cucumis melo] |
GenBank | AAF21207.1 | 0 | 12 | 390 | 63 | 437 | AC013483_31 putative polygalacturonase [Arabidopsis thaliana] |
RefSeq | NP_187454.2 | 0 | 12 | 390 | 63 | 438 | QRT2 (QUARTET 2); polygalacturonase [Arabidopsis thaliana] |
RefSeq | XP_002313308.1 | 0 | 12 | 390 | 1 | 375 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002517823.1 | 0 | 7 | 390 | 67 | 446 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 3e-20 | 111 | 309 | 113 | 318 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1nhc_F | 3e-18 | 116 | 378 | 79 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 3e-18 | 116 | 378 | 79 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 3e-18 | 116 | 378 | 79 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 3e-18 | 116 | 378 | 79 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
EX261408 | 261 | 16 | 275 | 0 |
EE093402 | 256 | 93 | 348 | 0 |
EE091344 | 242 | 117 | 358 | 0 |
EC945774 | 244 | 118 | 361 | 0 |
EX261408 | 36 | 272 | 307 | 0.00004 |
Sequence Alignments (This image is cropped. Click for full image.) |
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