y
Basic Information | |
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Species | Cucumis sativus |
Cazyme ID | Cucsa.128610.1 |
Family | CE8 |
Protein Properties | Length: 384 Molecular Weight: 42978.8 Isoelectric Point: 9.0705 |
Chromosome | Chromosome/Scaffold: 01024 Start: 568292 End: 570354 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 82 | 372 | 0 |
IIVSQDGTGDFRTVGEALNSIPKPNSKRVILVINPGVYSEKIIIPKSLPFVTFLGNVIDDQPTITGNDTASMTGEDGKPLGTLKSATVAVNANYFVAINM KFENRAMHEIGSVRGQGVALRISGTKAAFHNCSFYGDQDTLYDHKGLHYFNNCYIQGSVDFIFGYGRSFYEKCYLKSITKKVASMTAQKGLKGSMESGFS FKDSVVTGSGQIYLGRAWGDYSRVVFSYTFMDNIVLPQGWNDWGSQKRHLTVYYGEYKCSGPGADLKGRVQWAHNLTDEEAQPFIGTHYVD |
Full Sequence |
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Protein Sequence Length: 384 Download |
MNDFKFILLL LLFVCNLFLQ SYSLNVEERR EDYKNWLSWN LQNYKKKASL VDRSTVKLGR 60 SYNSGGVLDD KLKKAEMNKV RIIVSQDGTG DFRTVGEALN SIPKPNSKRV ILVINPGVYS 120 EKIIIPKSLP FVTFLGNVID DQPTITGNDT ASMTGEDGKP LGTLKSATVA VNANYFVAIN 180 MKFENRAMHE IGSVRGQGVA LRISGTKAAF HNCSFYGDQD TLYDHKGLHY FNNCYIQGSV 240 DFIFGYGRSF YEKCYLKSIT KKVASMTAQK GLKGSMESGF SFKDSVVTGS GQIYLGRAWG 300 DYSRVVFSYT FMDNIVLPQG WNDWGSQKRH LTVYYGEYKC SGPGADLKGR VQWAHNLTDE 360 EAQPFIGTHY VDADSWLLSP YSS* 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02634 | PLN02634 | 1.0e-95 | 82 | 377 | 298 | + probable pectinesterase | ||
PLN02432 | PLN02432 | 3.0e-98 | 77 | 377 | 301 | + putative pectinesterase | ||
PLN02671 | PLN02671 | 5.0e-100 | 32 | 377 | 348 | + pectinesterase | ||
PLN02665 | PLN02665 | 7.0e-117 | 66 | 380 | 318 | + pectinesterase family protein | ||
PLN02682 | PLN02682 | 3.0e-132 | 82 | 378 | 299 | + pectinesterase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACF22736.1 | 0 | 8 | 380 | 3 | 379 | pectinesterase family protein [Brachypodium distachyon] |
EMBL | CAN79461.1 | 0 | 28 | 380 | 31 | 381 | hypothetical protein [Vitis vinifera] |
GenBank | EEC69509.1 | 0 | 67 | 383 | 94 | 414 | hypothetical protein OsI_38743 [Oryza sativa Indica Group] |
RefSeq | NP_001067039.1 | 0 | 67 | 383 | 93 | 413 | Os12g0563700 [Oryza sativa (japonica cultivar-group)] |
RefSeq | XP_002320279.1 | 0 | 90 | 377 | 1 | 287 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 0 | 82 | 377 | 9 | 308 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 9.99995e-41 | 83 | 379 | 6 | 306 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 3uw0_A | 9e-18 | 83 | 365 | 34 | 352 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
PDB | 2ntq_B | 1e-16 | 78 | 365 | 5 | 328 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
PDB | 2ntq_A | 1e-16 | 78 | 365 | 5 | 328 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |