| Basic Information | |
|---|---|
| Species | Cucumis sativus |
| Cazyme ID | Cucsa.132050.1 |
| Family | GH28 |
| Protein Properties | Length: 325 Molecular Weight: 34549.9 Isoelectric Point: 10.1141 |
| Chromosome | Chromosome/Scaffold: 01037 Start: 141084 End: 142822 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 7 | 250 | 0 |
| KAACNSKTKSSTVLIPKRQTIMVKPILLSGPCRAKSTTFMINGVIVAPTSPKEWAGTDKSLWLALEGISRLRINGSGIGKIDGRGTGWWNQSCRDHPNLE GCTSIAPTAMKIISCNDPNLSNLHFINSSQALVLLMGCIRTEIKNLVITAPERSPNTDGIHIHSSHNIIIRNTTIGTGDDCVSIGDYTSRMNISHIKCGP GHGISIGSLGRGGNFVQVEDISVSNIYFKGTTNGARIKTWQQSG | |||
| Full Sequence |
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| Protein Sequence Length: 325 Download |
| AISKAWKAAC NSKTKSSTVL IPKRQTIMVK PILLSGPCRA KSTTFMINGV IVAPTSPKEW 60 AGTDKSLWLA LEGISRLRIN GSGIGKIDGR GTGWWNQSCR DHPNLEGCTS IAPTAMKIIS 120 CNDPNLSNLH FINSSQALVL LMGCIRTEIK NLVITAPERS PNTDGIHIHS SHNIIIRNTT 180 IGTGDDCVSI GDYTSRMNIS HIKCGPGHGI SIGSLGRGGN FVQVEDISVS NIYFKGTTNG 240 ARIKTWQQSG VHIANVSIKN LFGTSMSNVA INLNCSRSVA CTGSILLKSI QLQSVNSGQK 300 VTSGCIIAHG FAFGVVQPKP CLQI* 360 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02155 | PLN02155 | 2.0e-47 | 1 | 322 | 365 | + polygalacturonase | ||
| PLN03010 | PLN03010 | 3.0e-51 | 1 | 299 | 338 | + polygalacturonase | ||
| PLN03003 | PLN03003 | 3.0e-51 | 1 | 324 | 367 | + Probable polygalacturonase At3g15720 | ||
| PLN02218 | PLN02218 | 1.0e-51 | 1 | 286 | 324 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 3.0e-73 | 1 | 322 | 361 | + Probable polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAD55472.1 | 0 | 1 | 322 | 16 | 381 | AC009322_12 Similar to polygalacturonases [Arabidopsis thaliana] |
| GenBank | AAD55489.1 | 0 | 1 | 322 | 71 | 439 | AC009322_29 Similar to polygalacturonases [Arabidopsis thaliana] |
| DDBJ | BAC57279.1 | 0 | 1 | 321 | 71 | 423 | putative polygalacturonase PG1 [Oryza sativa Japonica Group] |
| GenBank | EEC81719.1 | 0 | 1 | 321 | 71 | 423 | hypothetical protein OsI_25337 [Oryza sativa Indica Group] |
| RefSeq | NP_565232.1 | 0 | 1 | 322 | 71 | 424 | polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 0.000000000000001 | 79 | 261 | 119 | 304 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1ib4_B | 0.000000001 | 58 | 305 | 60 | 306 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1ib4_A | 0.000000001 | 58 | 305 | 60 | 306 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1ia5_A | 0.000000001 | 58 | 305 | 60 | 306 | A Chain A, Polygalacturonase From Aspergillus Aculeatus |
| PDB | 1nhc_F | 0.00000007 | 58 | 261 | 56 | 249 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| DT769247 | 235 | 1 | 234 | 0 |
| DR923380 | 248 | 1 | 247 | 0 |
| EC954904 | 247 | 1 | 247 | 0 |
| DT769246 | 266 | 107 | 322 | 0 |
| EX314309 | 248 | 1 | 247 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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