| Basic Information | |
|---|---|
| Species | Cucumis sativus |
| Cazyme ID | Cucsa.135180.1 |
| Family | GH28 |
| Protein Properties | Length: 467 Molecular Weight: 50191.5 Isoelectric Point: 4.5089 |
| Chromosome | Chromosome/Scaffold: 01044 Start: 68231 End: 70539 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 96 | 421 | 0 |
| KAACAVESATLLVPSNLCFKITSTIFSGPCKPGLVFKVDGTLMPPDGPESWPKADSPRQWLVFYRLDQMTLTGSGTIEGNGQKWWELPCKPHRGPNGSTL PGPCDSPALIRFFMSSNLAVNSLRIQNSPMFHMKFDGCEGVLIEKLSISSPKLSPNTDGIHIENTKGVGIYNSMISNGDDCISIGPGCANVAIEGVTCGP SHGISIGSLGVHNSQACVSNITVRNAVIRDSDNGLRIKTWQGGSGSVSDILFENIQMENVRNCIIVDQYYCLSKDCLNQTSAVFVNQVLYKNIKGTYDVR NTPIHFACSDSVACTNITMSEVELLP | |||
| Full Sequence |
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| Protein Sequence Length: 467 Download |
| MIWVVAILFV ENSSNVNGRY HFHKGKKDED SSVSSPPENA VPSTPAQPLP SVPSDPYPND 60 PGTGNSTSDC VFDVTDFGAV GDGCTDDTAA FKAAWKAACA VESATLLVPS NLCFKITSTI 120 FSGPCKPGLV FKVDGTLMPP DGPESWPKAD SPRQWLVFYR LDQMTLTGSG TIEGNGQKWW 180 ELPCKPHRGP NGSTLPGPCD SPALIRFFMS SNLAVNSLRI QNSPMFHMKF DGCEGVLIEK 240 LSISSPKLSP NTDGIHIENT KGVGIYNSMI SNGDDCISIG PGCANVAIEG VTCGPSHGIS 300 IGSLGVHNSQ ACVSNITVRN AVIRDSDNGL RIKTWQGGSG SVSDILFENI QMENVRNCII 360 VDQYYCLSKD CLNQTSAVFV NQVLYKNIKG TYDVRNTPIH FACSDSVACT NITMSEVELL 420 PHEGELVEDP FCWNAFGIQE TLTIPPIDCL QEGEPQNVAE TSEYSC* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02188 | PLN02188 | 2.0e-67 | 68 | 446 | 385 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN03003 | PLN03003 | 1.0e-67 | 67 | 451 | 395 | + Probable polygalacturonase At3g15720 | ||
| PLN02218 | PLN02218 | 3.0e-83 | 74 | 419 | 350 | + polygalacturonase ADPG | ||
| pfam00295 | Glyco_hydro_28 | 2.0e-87 | 105 | 419 | 315 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02793 | PLN02793 | 2.0e-107 | 68 | 446 | 382 | + Probable polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAK95305.1 | 0 | 1 | 466 | 9 | 475 | AF410319_1 At1g48100/F21D18_17 [Arabidopsis thaliana] |
| RefSeq | NP_175244.1 | 0 | 1 | 466 | 9 | 475 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | XP_002263668.1 | 0 | 9 | 466 | 17 | 477 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002312305.1 | 0 | 8 | 466 | 16 | 482 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002519290.1 | 0 | 1 | 466 | 9 | 479 | Polygalacturonase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1czf_B | 3e-23 | 156 | 419 | 89 | 344 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
| PDB | 1czf_A | 3e-23 | 156 | 419 | 89 | 344 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
| PDB | 1nhc_F | 3e-23 | 133 | 419 | 40 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 3e-23 | 133 | 419 | 40 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_D | 3e-23 | 133 | 419 | 40 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| DW479564 | 318 | 79 | 396 | 0 |
| DY277859 | 367 | 57 | 420 | 0 |
| CX663441 | 286 | 182 | 467 | 0 |
| ES849368 | 295 | 118 | 410 | 0 |
| GR169315 | 262 | 153 | 414 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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