| Basic Information | |
|---|---|
| Species | Cucumis sativus |
| Cazyme ID | Cucsa.138430.1 |
| Family | GH28 |
| Protein Properties | Length: 387 Molecular Weight: 40663.8 Isoelectric Point: 6.4863 |
| Chromosome | Chromosome/Scaffold: 01063 Start: 96089 End: 97880 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 46 | 375 | 0 |
| ASACRARTAVSIYVPKGRFYVASLAFEGPCNNNDITIRIDGTLLAPSNYGVIANSGNWITFRRVDGVTLFGGVLDAQGSGLWACKNSKSSCPPGATSLEF SNSKNIMVSGLTSLNSQMFHIVINGCQNVKAQGLKVSAAGNSPNTDGIHVALSSTVTILNSIIGTGDDCISIGPGTSNLWIENVACGPGHGISIGSLGRE VQEDGVENVTVKSATFTNTQNGVRIKTWGKPSNGFARSVIFQDIVMVNVENPIIIDQNYCPDNKGCPGQDSGVKISDVTYRNIHGTSATQVAMKFDCSSK FPCSDITLEDVKLSCKNEAAEASCSHAEGS | |||
| Full Sequence |
|---|
| Protein Sequence Length: 387 Download |
| MAFHKTLFFP FLFLTLASAS TFNVVDFGAK PNVQTDSSQA FEAAWASACR ARTAVSIYVP 60 KGRFYVASLA FEGPCNNNDI TIRIDGTLLA PSNYGVIANS GNWITFRRVD GVTLFGGVLD 120 AQGSGLWACK NSKSSCPPGA TSLEFSNSKN IMVSGLTSLN SQMFHIVING CQNVKAQGLK 180 VSAAGNSPNT DGIHVALSST VTILNSIIGT GDDCISIGPG TSNLWIENVA CGPGHGISIG 240 SLGREVQEDG VENVTVKSAT FTNTQNGVRI KTWGKPSNGF ARSVIFQDIV MVNVENPIII 300 DQNYCPDNKG CPGQDSGVKI SDVTYRNIHG TSATQVAMKF DCSSKFPCSD ITLEDVKLSC 360 KNEAAEASCS HAEGSAAGLV QPSSCL* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02218 | PLN02218 | 1.0e-84 | 18 | 382 | 372 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 7.0e-90 | 18 | 386 | 377 | + Probable polygalacturonase | ||
| pfam00295 | Glyco_hydro_28 | 4.0e-92 | 55 | 377 | 325 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02188 | PLN02188 | 5.0e-102 | 17 | 385 | 375 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN02155 | PLN02155 | 1.0e-134 | 17 | 386 | 371 | + polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAC64184.1 | 0 | 1 | 386 | 1 | 393 | endopolygalacturonase [Prunus persica] |
| GenBank | ABD33834.1 | 0 | 1 | 386 | 1 | 393 | polygalacturonase [Prunus domestica subsp. insititia] |
| DDBJ | BAF42034.1 | 0 | 1 | 386 | 1 | 398 | polygalacturonase3 [Pyrus communis] |
| EMBL | CAH18935.1 | 0 | 1 | 386 | 1 | 398 | polygalacturonase [Pyrus communis] |
| RefSeq | XP_002529090.1 | 0 | 1 | 386 | 1 | 393 | Polygalacturonase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 1e-18 | 90 | 359 | 85 | 362 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1ib4_B | 2e-18 | 150 | 369 | 114 | 339 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1ib4_A | 2e-18 | 150 | 369 | 114 | 339 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1ia5_A | 2e-18 | 150 | 369 | 114 | 339 | A Chain A, Polygalacturonase From Aspergillus Aculeatus |
| PDB | 1hg8_A | 9e-18 | 43 | 354 | 12 | 327 | A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus Fusarium Moniliforme |
