| Basic Information | |
|---|---|
| Species | Cucumis sativus |
| Cazyme ID | Cucsa.138440.1 |
| Family | GH28 |
| Protein Properties | Length: 379 Molecular Weight: 40279.6 Isoelectric Point: 7.7928 |
| Chromosome | Chromosome/Scaffold: 01063 Start: 102780 End: 104727 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 36 | 363 | 0 |
| ARACASKVASTVYVPKGRFYVQSGNFIGPCNNNSITFLIDGTLVASSDFTVLAKSRTWISFSHINGLSIYGGVLDGQGTTLWACKNSGINTCSLGATTLE VSDSQNILINGLSSVNSQMYHIVVYDCQDVKIQGVKVLAASNSPNTDGIHVERSSNVAILNSNISTGDDCISIGPGTSHLWMERLACGPGHGISIGSLGK WWEEAGVKNVTLKTAHFKGTMNGVRIKSWGRPSNGSAKNILFQHIVLDNVTNPLIIDQNYCPHNQGCPNQASGVKISNVTYKDIRGTSATEVGINFECSP ARPCNQIRLEDVKLIFKDQIAQAWCEYA | |||
| Full Sequence |
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| Protein Sequence Length: 379 Download |
| HALAAATGGL TFDIVNLGAK PDCKTDASHA LQSAWARACA SKVASTVYVP KGRFYVQSGN 60 FIGPCNNNSI TFLIDGTLVA SSDFTVLAKS RTWISFSHIN GLSIYGGVLD GQGTTLWACK 120 NSGINTCSLG ATTLEVSDSQ NILINGLSSV NSQMYHIVVY DCQDVKIQGV KVLAASNSPN 180 TDGIHVERSS NVAILNSNIS TGDDCISIGP GTSHLWMERL ACGPGHGISI GSLGKWWEEA 240 GVKNVTLKTA HFKGTMNGVR IKSWGRPSNG SAKNILFQHI VLDNVTNPLI IDQNYCPHNQ 300 GCPNQASGVK ISNVTYKDIR GTSATEVGIN FECSPARPCN QIRLEDVKLI FKDQIAQAWC 360 EYATGTTLGL VQPSNCLV* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam00295 | Glyco_hydro_28 | 2.0e-84 | 39 | 364 | 327 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02218 | PLN02218 | 1.0e-87 | 11 | 373 | 369 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 5.0e-91 | 16 | 377 | 369 | + Probable polygalacturonase | ||
| PLN02188 | PLN02188 | 8.0e-108 | 8 | 376 | 375 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN02155 | PLN02155 | 3.0e-122 | 5 | 377 | 374 | + polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAC26510.1 | 0 | 5 | 378 | 20 | 393 | polygalacturonase precursor [Cucumis melo] |
| GenBank | ABC72324.1 | 0 | 10 | 377 | 26 | 393 | endo-polygalacturonase [Prunus persica] |
| GenBank | ABD33834.1 | 0 | 10 | 377 | 26 | 393 | polygalacturonase [Prunus domestica subsp. insititia] |
| GenBank | ABO71786.1 | 0 | 5 | 378 | 20 | 393 | polygalacturonase [Cucumis melo] |
| GenBank | ABV32553.1 | 0 | 10 | 377 | 26 | 393 | endopolygalacturonase [Prunus persica] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 3e-20 | 104 | 349 | 113 | 361 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1rmg_A | 2e-16 | 11 | 349 | 20 | 338 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
| PDB | 1nhc_F | 0.00000000000003 | 106 | 329 | 77 | 301 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 0.00000000000003 | 106 | 329 | 77 | 301 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_D | 0.00000000000003 | 106 | 329 | 77 | 301 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| DV633521 | 211 | 82 | 292 | 0 |
| DY281549 | 317 | 10 | 326 | 0 |
| JZ191937 | 300 | 78 | 377 | 0 |
| JZ194028 | 289 | 72 | 360 | 0 |
| JZ192826 | 287 | 76 | 362 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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