y
Basic Information | |
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Species | Cucumis sativus |
Cazyme ID | Cucsa.140360.1 |
Family | PL1 |
Protein Properties | Length: 434 Molecular Weight: 48208.5 Isoelectric Point: 7.9843 |
Chromosome | Chromosome/Scaffold: 01071 Start: 212823 End: 217880 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 147 | 351 | 0 |
IQDRPLWIVFKRDMVITLKQELIMNSFKTIDGRGANVHIAYGACITIQFITNVIIHGLHIHDCKPTGNAMVRSSPSHYGWRTMADGDGISIFGSSHIWID HNSLSSCADGLIDAVMGSTAITISNNYFTHHNEVMLLGHSDSYVRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWVMYAIGGSADPTINSQ GNRYL |
Full Sequence |
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Protein Sequence Length: 434 Download |
MAVSVTLQTS TSLLLLLLLI FFFLHSSFAE DERLHSFNSS SMPYRYIENE HAVDNPEEIA 60 SMVDLSIRNS TERRNLGFFS CGTGNPIDDC WRCDPRWQLR RKHLANCGIG FGRNAVGGRD 120 GRYYVVSDPG DDDPINPRPG TLRHAVIQDR PLWIVFKRDM VITLKQELIM NSFKTIDGRG 180 ANVHIAYGAC ITIQFITNVI IHGLHIHDCK PTGNAMVRSS PSHYGWRTMA DGDGISIFGS 240 SHIWIDHNSL SSCADGLIDA VMGSTAITIS NNYFTHHNEV MLLGHSDSYV RDKQMQVTIA 300 YNHFGEGLIQ RMPRCRHGYF HVVNNDYTHW VMYAIGGSAD PTINSQGNRY LAPVNPFAKE 360 VTKRVETHNG IWKHWNWRSE GDLMLNGAYF TPSGAGAAAS YARASSLGAK SSSLVGSITS 420 NAGALACRRG YRC* 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3866 | PelB | 1.0e-26 | 172 | 348 | 189 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 5.0e-68 | 165 | 350 | 208 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 2.0e-79 | 159 | 353 | 206 | + Amb_all domain. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAN75298.1 | 0 | 32 | 433 | 37 | 445 | hypothetical protein [Vitis vinifera] |
EMBL | CBI33346.1 | 0 | 32 | 433 | 32 | 430 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002265100.1 | 0 | 32 | 433 | 37 | 445 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002285639.1 | 0 | 32 | 433 | 34 | 432 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002521130.1 | 0 | 1 | 433 | 1 | 441 | Pectate lyase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 85 | 425 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 85 | 425 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 6e-16 | 154 | 341 | 50 | 227 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1vbl_A | 0.00000000000001 | 175 | 327 | 135 | 301 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
PDB | 1pe9_B | 0.00000000000005 | 175 | 424 | 90 | 358 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |