y
Basic Information | |
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Species | Cucumis sativus |
Cazyme ID | Cucsa.142040.1 |
Family | CE8 |
Protein Properties | Length: 395 Molecular Weight: 43286.4 Isoelectric Point: 8.7084 |
Chromosome | Chromosome/Scaffold: 01079 Start: 357483 End: 361282 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 88 | 372 | 0 |
ITVRKDGRGNFSTITEAIDSIPSGNRRRVVVWIGGGVYREKITIDASKPFVTLYGQKGKRPMITFDGTASEFGTVKSATVAVESDYFVAVNLTFVNSAPM PELGGTGGQAVAMRISGDKAAFHGCHFIGFQDTLCDDRGRHFFKDCYVQGTVDFIFGNGKSLYLKTTINSVAEGTGVITAQAREDATDESGFTFAYCNIT GTGDTYLGRAWKERTRVVFAYTYMGTLINTEGWSDKMHGSQPRKSMYYGEYKCKGPGATPSGRVKYARILSDVEAKAFLSMTYIH |
Full Sequence |
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Protein Sequence Length: 395 Download |
MFRPTVASSF PATVAFAMGV MLQLIILIII PSTVVVEAHT KTIPADSSKL DEWIGHNMKE 60 YNDRKTNETG IKALDRRLAE AEDCVQLITV RKDGRGNFST ITEAIDSIPS GNRRRVVVWI 120 GGGVYREKIT IDASKPFVTL YGQKGKRPMI TFDGTASEFG TVKSATVAVE SDYFVAVNLT 180 FVNSAPMPEL GGTGGQAVAM RISGDKAAFH GCHFIGFQDT LCDDRGRHFF KDCYVQGTVD 240 FIFGNGKSLY LKTTINSVAE GTGVITAQAR EDATDESGFT FAYCNITGTG DTYLGRAWKE 300 RTRVVFAYTY MGTLINTEGW SDKMHGSQPR KSMYYGEYKC KGPGATPSGR VKYARILSDV 360 EAKAFLSMTY IHGNKWLLPP PDLSLSPSKP NIFH* 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02634 | PLN02634 | 5.0e-84 | 85 | 376 | 299 | + probable pectinesterase | ||
PLN02432 | PLN02432 | 4.0e-90 | 87 | 376 | 290 | + putative pectinesterase | ||
PLN02304 | PLN02304 | 4.0e-91 | 83 | 376 | 303 | + probable pectinesterase | ||
PLN02682 | PLN02682 | 5.0e-106 | 72 | 376 | 314 | + pectinesterase family protein | ||
PLN02665 | PLN02665 | 0 | 20 | 376 | 359 | + pectinesterase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI27759.1 | 0 | 20 | 382 | 28 | 389 | unnamed protein product [Vitis vinifera] |
EMBL | CBI38548.1 | 0 | 8 | 383 | 8 | 370 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002277518.1 | 0 | 20 | 382 | 16 | 377 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002326144.1 | 0 | 22 | 383 | 10 | 374 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002516214.1 | 0 | 11 | 383 | 11 | 378 | Pectinesterase-3 precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 0 | 88 | 377 | 9 | 308 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 0 | 90 | 377 | 7 | 304 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntq_B | 4e-21 | 93 | 365 | 14 | 328 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntq_A | 4e-21 | 93 | 365 | 14 | 328 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntp_B | 4e-21 | 93 | 365 | 14 | 328 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |