| Basic Information | |
|---|---|
| Species | Cucumis sativus |
| Cazyme ID | Cucsa.143690.1 |
| Family | CBM22 |
| Protein Properties | Length: 947 Molecular Weight: 105363 Isoelectric Point: 6.8179 |
| Chromosome | Chromosome/Scaffold: 01080 Start: 9324 End: 16570 |
| Description | glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CBM22 | 63 | 201 | 1.2e-26 |
| NILQNHDFSMGLQHWHPNCCNGYVTLAKSNNLDEASHSSCARYAIATDRNECWQGLEQEITNSIIPGITYSVSAIVGVSGSLQGFADVLATLKLVYKDST INYLGIGRSSVLKDKWEKLDGTFSLSTMPDRVVFYLEGP | |||
| CBM22 | 234 | 370 | 5.7e-32 |
| NIILNPKFDDDLKNWSARGCKIVVHDSMGNGKVLPQSGKFFASATERTQSWNGIQQEITGRVQRKLAYDVVAVVRVFGNNITTTDVRATLWVQTPNSRDQ YIGIANVQATDKDWVQLQGKFLLNASPSKVVIYIEGP | |||
| CBM22 | 405 | 546 | 9.80909e-45 |
| NIIENSNLSNGTNGWFPLGSCTLNVGTGSPHIVPPMARDSLGPSQPLSGRYILVTNRTQTWMGPAQMITDKVKLFLTYQVSAWVKIGSGATGAQNVNVAL GVDNQWVNGGQVEISDNRWHEIGGSFRIEKQATKIMVYIQGP | |||
| GH10 | 601 | 869 | 0 |
| QMQNSFPFGTCISRTNIDNEDFVNFFVKNFNWAVFGNELKWYWTEPQQGNLNYKDADELLDLCKSHNIETRGHCIFWEVQGAVQQWIQSLNKNDMMAAVQ NRLTDLLTRYKGKFKHYDVNNEMLHGSFYQDHLGKDIRADMFKNANKLDPSALLFVNDYHVEDGCDTRSSPEKYIEQILQLQEQGAIVGGVGIQGHIDSP VGPIVSSALDKMGILGLPIWFTELDVSSINEYVRADDLEVMLREAYAHPAVEGIMLWGFWELFMSRDNS | |||
| Full Sequence |
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| Protein Sequence Length: 947 Download |
| MRRVCACCFT SSSPNIKRQN PNSDKPSQSS VVTMRTTQQN NATQLPKDVE ETPAKLSPPR 60 AANILQNHDF SMGLQHWHPN CCNGYVTLAK SNNLDEASHS SCARYAIATD RNECWQGLEQ 120 EITNSIIPGI TYSVSAIVGV SGSLQGFADV LATLKLVYKD STINYLGIGR SSVLKDKWEK 180 LDGTFSLSTM PDRVVFYLEG PSPGIDLLIQ SVEITCASPN EMKKSGKDNA SDENIILNPK 240 FDDDLKNWSA RGCKIVVHDS MGNGKVLPQS GKFFASATER TQSWNGIQQE ITGRVQRKLA 300 YDVVAVVRVF GNNITTTDVR ATLWVQTPNS RDQYIGIANV QATDKDWVQL QGKFLLNASP 360 SKVVIYIEGP PSGVDILIDS LIVKHAQKIP PSPPPSYENP AYGFNIIENS NLSNGTNGWF 420 PLGSCTLNVG TGSPHIVPPM ARDSLGPSQP LSGRYILVTN RTQTWMGPAQ MITDKVKLFL 480 TYQVSAWVKI GSGATGAQNV NVALGVDNQW VNGGQVEISD NRWHEIGGSF RIEKQATKIM 540 VYIQGPAPSV DLMVAGLQIF PIDRRARLRY LRTQTDKIRR RDITLKFSGS SSSGTFVKVR 600 QMQNSFPFGT CISRTNIDNE DFVNFFVKNF NWAVFGNELK WYWTEPQQGN LNYKDADELL 660 DLCKSHNIET RGHCIFWEVQ GAVQQWIQSL NKNDMMAAVQ NRLTDLLTRY KGKFKHYDVN 720 NEMLHGSFYQ DHLGKDIRAD MFKNANKLDP SALLFVNDYH VEDGCDTRSS PEKYIEQILQ 780 LQEQGAIVGG VGIQGHIDSP VGPIVSSALD KMGILGLPIW FTELDVSSIN EYVRADDLEV 840 MLREAYAHPA VEGIMLWGFW ELFMSRDNSH LVNAEGEINE AGKRYLGLKH EWLSHASGQM 900 DGTSEFKFRG FQGTYNVQII VNASKKISKT FVVEKGDTPV EISIDM* 960 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam02018 | CBM_4_9 | 2.0e-16 | 234 | 372 | 141 | + Carbohydrate binding domain. This family includes diverse carbohydrate binding domains. | ||
| pfam02018 | CBM_4_9 | 1.0e-16 | 62 | 203 | 144 | + Carbohydrate binding domain. This family includes diverse carbohydrate binding domains. | ||
| COG3693 | XynA | 7.0e-26 | 590 | 859 | 292 | + Beta-1,4-xylanase [Carbohydrate transport and metabolism] | ||
| smart00633 | Glyco_10 | 3.0e-67 | 639 | 884 | 267 | + Glycosyl hydrolase family 10. | ||
| pfam00331 | Glyco_hydro_10 | 8.0e-69 | 604 | 884 | 301 | + Glycosyl hydrolase family 10. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| GO:0016798 | hydrolase activity, acting on glycosyl bonds |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAX33301.1 | 0 | 34 | 946 | 1 | 915 | putative endo-1,4-beta-xylanase [Populus tremula x Populus tremuloides] |
| RefSeq | XP_002301133.1 | 0.0000000009 | 53 | 214 | 496 | 660 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002301133.1 | 0 | 61 | 946 | 162 | 1049 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002301133.1 | 0 | 63 | 554 | 2 | 479 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002301133.1 | 0 | 233 | 559 | 1 | 314 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1xyz_B | 8e-28 | 609 | 859 | 40 | 307 | A Chain A, A Common Protein Fold And Similar Active Site In Two Distinct Families Of Beta-Glycanases |
| PDB | 1xyz_A | 8e-28 | 609 | 859 | 40 | 307 | A Chain A, A Common Protein Fold And Similar Active Site In Two Distinct Families Of Beta-Glycanases |
| PDB | 1i1x_A | 2e-26 | 608 | 858 | 18 | 268 | A Chain A, A Common Protein Fold And Similar Active Site In Two Distinct Families Of Beta-Glycanases |
| PDB | 1i1w_A | 2e-26 | 608 | 858 | 18 | 268 | A Chain A, 0.89a Ultra High Resolution Structure Of A Thermostable Xylanase From Thermoascus Aurantiacus |
| PDB | 2bnj_A | 3e-26 | 608 | 858 | 18 | 268 | A Chain A, The Xylanase Ta From Thermoascus Aurantiacus Utilizes Arabinose Decorations Of Xylan As Significant Substrate Specificity Determinants |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| EB442796 | 298 | 432 | 726 | 0 |
| GW865493 | 309 | 503 | 808 | 0 |
| EB442796 | 126 | 256 | 381 | 0.00000006 |
| EB442796 | 118 | 97 | 214 | 0.0000005 |
| GW865493 | 50 | 332 | 381 | 9.9 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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