| Basic Information | |
|---|---|
| Species | Cucumis sativus |
| Cazyme ID | Cucsa.143900.1 |
| Family | GH28 |
| Protein Properties | Length: 425 Molecular Weight: 45537.7 Isoelectric Point: 7.5788 |
| Chromosome | Chromosome/Scaffold: 01080 Start: 280320 End: 282997 |
| Description | polygalacturonase 4 |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 110 | 339 | 0 |
| ACRNTVGPAKFLIPQGTFLVGPVTFAGPCKSYPITLENQGTVKATTDISAYSSPEWFSIEDITGFILTGSGVFDGQGLSVWPYNDCKKNNLCQLLPISIK FTRLNHTIVDGLTSINSMGFHTSVFYCYNFTATNIKIIAPHNSPNTDGTHLSTSKLVTIANSVIGTGDDCVSIGHSTENITVTNVTCGPGHGLSVGSLGK YSKEKGVYDVLVKNCTIFNATNGARIKTWA | |||
| Full Sequence |
|---|
| Protein Sequence Length: 425 Download |
| MTRNLSLIQI ILLEFAWQSC AVIFNDITGT QNLLKGIVPT TNKQFLRPAE APRHLGFNTL 60 PDIGGTVNDI NANVDLNENG GSVFDVTKHG AKADGKTDDA QAFMTTWIAA CRNTVGPAKF 120 LIPQGTFLVG PVTFAGPCKS YPITLENQGT VKATTDISAY SSPEWFSIED ITGFILTGSG 180 VFDGQGLSVW PYNDCKKNNL CQLLPISIKF TRLNHTIVDG LTSINSMGFH TSVFYCYNFT 240 ATNIKIIAPH NSPNTDGTHL STSKLVTIAN SVIGTGDDCV SIGHSTENIT VTNVTCGPGH 300 GLSVGSLGKY SKEKGVYDVL VKNCTIFNAT NGARIKTWAN ALSNESNWKV SNVQFKNIRG 360 TSTTNVAVLL ECSKLFPCEG VELRDINLSY GGTNLRNTTI VSSCSNAKIA TFGVQKPPPC 420 VDCI* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN03010 | PLN03010 | 6.0e-64 | 40 | 389 | 392 | + polygalacturonase | ||
| PLN02155 | PLN02155 | 4.0e-66 | 74 | 422 | 385 | + polygalacturonase | ||
| PLN02793 | PLN02793 | 3.0e-71 | 83 | 423 | 382 | + Probable polygalacturonase | ||
| pfam00295 | Glyco_hydro_28 | 8.0e-82 | 111 | 409 | 332 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02188 | PLN02188 | 1.0e-115 | 72 | 420 | 386 | + polygalacturonase/glycoside hydrolase family protein | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CAN69218.1 | 0 | 80 | 416 | 52 | 421 | hypothetical protein [Vitis vinifera] |
| EMBL | CBI36886.1 | 0 | 76 | 420 | 37 | 414 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002268540.1 | 0 | 76 | 420 | 37 | 410 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002272193.1 | 0 | 80 | 420 | 52 | 426 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002301489.1 | 0 | 82 | 420 | 44 | 412 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 6e-16 | 178 | 358 | 115 | 304 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1nhc_F | 0.000000000002 | 158 | 371 | 51 | 262 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 0.000000000002 | 158 | 371 | 51 | 262 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_D | 0.000000000002 | 158 | 371 | 51 | 262 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_C | 0.000000000002 | 158 | 371 | 51 | 262 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
